Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o06
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     99   4e-21
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     87   1e-17
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     78   6e-15
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   1e-06
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)                   31   1.3  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)                       29   3.9  
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    29   3.9  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)                     29   5.1  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)                    28   9.0  

>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
 Frame = +3

Query: 270  SRLMYALMLVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVG 446
            SR  Y L L +  ++  ITL P +   + K+P+ C   T   +           CD  VG
Sbjct: 773  SRFFYVLFLCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVG 821

Query: 447  YLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKY-LLVXXXXXXXXXXXX 623
            Y A YRI FA  +F+ L++++   V S+K  RA I NGFW IK   L             
Sbjct: 822  YSAAYRIYFAMTVFYFLLSILTYNVSSTKQFRARIHNGFWYIKLSFLSLLLIVAFYIPFT 881

Query: 624  XXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWA 725
                  WM  G+ GGF +I++Q++L+IDF HSW+
Sbjct: 882  KMFGMVWMYVGLTGGFMFILLQIVLVIDFGHSWS 915


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
 Frame = +3

Query: 453 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIK-YLLVXXXXXXXXXXXXXX 629
           ++YR+ FA  +F+ LMA ++IGV++ +D RA   NGFW IK  LL+              
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRAKFHNGFWYIKILLLLGLTAGSFFIPRHGQ 559

Query: 630 XASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 728
             + WM  G+ GGF +I+IQL+L+IDFAH W E
Sbjct: 560 FHAFWMYIGLAGGFLFILIQLLLLIDFAHCWNE 592


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
 Frame = +3

Query: 261 STSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCDE 437
           STS+R +Y    +  TI       P +   L     FC     S ++ L  GN       
Sbjct: 342 STSTRFVYTFFFLCGTIASSFMYLPSVRQALGHNRFFC-----SKISRL--GNCM---SH 391

Query: 438 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXX 617
             GYLAVYRI      F++L A+++  V++  DPRA IQNG W +K+ L           
Sbjct: 392 DPGYLAVYRICLTMATFYILFAVVLYNVRTYADPRALIQNGLWVVKFGL-FFGLLVCTFF 450

Query: 618 XXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSW 722
                +  W   G++G F +IV+Q+IL++DF   W
Sbjct: 451 IPLEFSRVWTYVGLLGTFFFIVMQMILLVDFTRVW 485


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
 Frame = +3

Query: 264 TSSRLMYALMLVLVTIVCCITLAPGLHNE-LQKLPFCTNATDSTVTGLLPGNFKVDCDEA 440
           TS +++Y L L+  T+V      P L N  +    FC    D ++           CD  
Sbjct: 16  TSGKVIYLLFLMTGTLVSTFMFFPDLRNFFVVHSQFCDK--DLSLE---------KCDLL 64

Query: 441 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXX 620
           VG++ +YRI F   +FFL MA++           A ++NG W +K+ L            
Sbjct: 65  VGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNLFCLSVLLSLLLP 124

Query: 621 XXXXASTWMVFGMIGGFCYIVIQLILIIDFA 713
                +  M  G       + ++++LIIDFA
Sbjct: 125 EGEIGNILMHTGWFSTIIVMFMEVLLIIDFA 155


>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 328 KVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAP 161
           K IQ T   +     Y  R +VE +  G   QH  QA  PQQ A  AA     Q P+TAP
Sbjct: 26  KTIQETTKPNKRKIEYTIRVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAP 85

Query: 160 I 158
           +
Sbjct: 86  M 86


>SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +3

Query: 480 CLFFLLMALIMIGVKSSKDPRAGIQNG 560
           C FFL M +I I V SSKD R GI NG
Sbjct: 3   CFFFLFM-IITIKVSSSKDCRGGIHNG 28


>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
          Length = 259

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/79 (24%), Positives = 38/79 (48%)
 Frame = -1

Query: 403 SPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSE 224
           +P   +    + +G   S LC    ++ +H      S++   + E+  LV+DG+ +Q +E
Sbjct: 112 TPFQAIDFLVLAHGFKMSELCKQCIEIAKHI-----SLNELRKHEKYSLVEDGNGKQLAE 166

Query: 223 QAVLPQQHASCAAEQRPNT 167
           + V   +      EQ+PN+
Sbjct: 167 RRVELLEGKVATLEQKPNS 185


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 617  DEECSDNATNNQ*IFDGPKTILNSSSWIFRRFDTNHN*RH*QKEETCCKCNSINSQISNR 438
            D+ CS N ++N  I +   +I N++S I  R   NHN  +      C   NSIN++ +N 
Sbjct: 1707 DKNCSSNNSDNNSIINN-NSINNNNSSINNR-SNNHN-NNNNSINNCNNNNSINNRNNNN 1763

Query: 437  FI 432
             I
Sbjct: 1764 SI 1765



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/89 (23%), Positives = 44/89 (49%)
 Frame = -3

Query: 704  NDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNSSSWIFRR 525
            N+ + ++NN +  +N+S  +   S + + +   S N  NN  I +   +I+N++S I   
Sbjct: 1793 NNSSIINNNSSINNNNSSINNNNSSIINNN---SSNNNNNSSINNNNSSIINNNSSIINN 1849

Query: 524  FDTNHN*RH*QKEETCCKCNSINSQISNR 438
              + +N  +        + N+ N+ I+NR
Sbjct: 1850 NSSINNRNNTNNNSINNRSNTNNNSINNR 1878


>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 701 DKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNN 585
           DKN  +NN + +SN+S  +   S  +S +   + N+ NN
Sbjct: 62  DKNNNNNNNSSSSNNSNSNSSSSSSSSSNSNSNSNSNNN 100


>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 210 HSNTLAVLQNKGPI-LHPFLVFISHFVCVDCDVCFM 106
           HS ++     K PI    F V+I+HF C D  +CF+
Sbjct: 422 HSESIG--NKKSPIETDAFEVYINHFTCTDTALCFI 455


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 713 CKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSD 600
           C + DK+EL +      +++ HH  + K   WD   +D
Sbjct: 157 CGMRDKDELRDKEGMREHYNAHHSGKVKREEWDRSRAD 194


>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
          Length = 686

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 707 INDKNE-LDNNVAEASNHSKHHPCRSKLTSWDEECSDNA 594
           + D +E L N + EAS  SKHHP +      +  C D++
Sbjct: 446 VQDNSEWLQNGLVEASQGSKHHPHKGNRDFKNGICHDSS 484


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 565 QKPF*IPALGSLEDLTPIIINAISRKKRHV 476
           Q P   P + SLE+L+P+ ++ I RKK+ V
Sbjct: 667 QPPSVRPRIQSLEELSPMAVDEIMRKKQSV 696


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 730 ISAQECAKSMIRMSWITM*QKPPIIPNTIHVEAN*PPGMKNAPIMPPITNKYLMAQKP 557
           I AQEC  + + + W+ M  KP  + + I          K +  +  IT++Y +A  P
Sbjct: 189 IFAQECCMTSL-LGWLKMADKPDFLKDLISSAIKEVHSKKRSFELSEITDEYFLASLP 245


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 267  RWNWCKMD--MLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISH 139
            +W +C +   +L N  +  C      AV+ +K P L+P + +I++
Sbjct: 3681 KWEFCSLAFMVLENCYSVACYSDELCAVVPSKSPQLNPRIAYINN 3725


>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
          Length = 164

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 267 SSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNF 419
           S+R+++ L+  +V IVC +    GL+   +  P   N T++ + G+  G F
Sbjct: 38  SARVVFILLGWIVAIVCGLASLYGLYKNFRTHPEPFNMTENVIYGVF-GRF 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,800,770
Number of Sequences: 59808
Number of extensions: 473377
Number of successful extensions: 1264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)