Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o03
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    29   0.082
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   1.0  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    24   2.3  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   3.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    23   4.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    23   5.4  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    23   5.4  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    23   5.4  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    23   7.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   7.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    23   7.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    22   9.4  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    22   9.4  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.082
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 133 ERSSLLQPLDLNGQVFSYPPKSVRVTVVGPP 225
           + S++LQPL++N  +   PPKS+  +++  P
Sbjct: 518 KHSAVLQPLEVNRSISIPPPKSISPSILHKP 548


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 46  P*PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKS 198
           P PS + SI     +V+P + Q+ T   PE S + +  + +  + S  P S
Sbjct: 8   PKPSISPSIASSFPTVKPFSSQNSTTSNPELSHIEKESNASSIIISQQPLS 58


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 SCTIFRPERSSLLQPLDLNGQVFSYPPKSVR 204
           +C  +RP+        D+NG ++ + PK+++
Sbjct: 345 NCAAYRPDFEQCFTG-DMNGNIYMWSPKALK 374


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
 Frame = +1

Query: 124 FRPERSSLLQPLD------LNGQVFSYPPKSVR 204
           F PERS +  PLD      +NG  F  P K VR
Sbjct: 406 FAPERSPITLPLDPEIIREMNGFDFGPPEKIVR 438


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 64  ISIPELSCSVR--PANGQSCTIFRPERSSLLQPLDLNGQV 177
           I IP+ S S    P+N  + + F P+ SSL  P  ++  +
Sbjct: 64  IQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESI 103



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 RSSLLQPLDLNGQVFSYPP 192
           +S  +QP + NG+  SY P
Sbjct: 690 KSGTIQPTNRNGEGLSYSP 708


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 172 QVFSYPPKSVRVT 210
           ++F+YPPKSV+ T
Sbjct: 792 KLFAYPPKSVQPT 804


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +1

Query: 52  PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKSVRVTVVG 219
           PSC   I   +     +  ++C I R   ++     DL G +    PK  R   +G
Sbjct: 106 PSCKFEICSTNQYFSSSKPEACVIARESINAGEDITDLCGTIIKLSPKEERNIGIG 161


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  PANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKSVRVTV 213
           P N QS   F P+ S  ++    NG      P ++++++
Sbjct: 6   PENEQSKKTFDPKDSMKIEETSTNGSSQPSQPSNIKLSI 44


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 39  LTALTKLHDQHSRALLFRPPRKRTVLYNLS 128
           LT    L D     LLF    K T++ NLS
Sbjct: 600 LTYRNNLSDGEQSPLLFNFKTKNTIIQNLS 629


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -2

Query: 211  QSRALI*EDRRRLDRSGREVVEDL 140
            +  +++ ED + ++++ +EV+EDL
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDL 1623


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 123 DCTRLSVCGADGTGELGNADRAAWLGL 43
           D  R+  CG   +GELG  +R+   GL
Sbjct: 107 DRRRVCSCGEGLSGELGQGNRSNSQGL 133


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 157  LDLNGQVFSYPPKSVRVTVVGPP 225
            L +    F   PK+ +V+ +GPP
Sbjct: 3016 LTIGASAFRKVPKNAKVSNIGPP 3038


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 163 LNGQVFSYPPKSV 201
           L GQ++ YPPK +
Sbjct: 428 LAGQIYRYPPKYI 440


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 12  YNPSMNTIWLTALTKLHD 65
           Y+P  N I  T+ T++HD
Sbjct: 114 YDPKSNAIVGTSFTRVHD 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 884,017
Number of Sequences: 5004
Number of extensions: 13540
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)