Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8o03
(236 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0100 + 12861588-12862601 25 2.1
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 27 2.1
07_03_0253 + 15853307-15855220 26 3.7
06_02_0074 - 11461300-11461681,11461744-11462009 26 4.9
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 25 6.5
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 25 8.6
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380... 25 8.6
>10_07_0100 + 12861588-12862601
Length = 337
Score = 25.0 bits (52), Expect(2) = 2.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 52 PSCTISIPELSCSVRPANGQSCTIFRP 132
P+C+ PE +CS P + S RP
Sbjct: 186 PACSPDYPEPACSTAPPSSSSSYARRP 212
Score = 20.6 bits (41), Expect(2) = 2.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 127 RPERSSLLQPLDLNGQV 177
RP RS ++ LD++G+V
Sbjct: 231 RPSRSRTVRFLDIDGKV 247
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 76 ELSCSVRP-ANGQSCTIFRPERSSLLQPLDLNGQVFSYPP 192
EL S P A G T+F P+ +L LD + +VFS+ P
Sbjct: 315 ELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEP 354
>07_03_0253 + 15853307-15855220
Length = 637
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 123 DCTRLSVCGADGTGELGNADRAAW 52
D RLSV G DG GE+G W
Sbjct: 99 DGERLSVPGGDGGGEVGGGLEIEW 122
>06_02_0074 - 11461300-11461681,11461744-11462009
Length = 215
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 167 FRSRGCRRLDRSGRKIVQDCPFAGRTEQESSG 72
+R RGCRR R GR+ V + + T ++ G
Sbjct: 122 WRRRGCRRRCRWGRRTVTEKAYKVATAGDTEG 153
>10_08_0141 + 15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 146 RLDRSGRKIVQ--DCPFAGRTEQESSGMLIVQLG*GCQPNSIHTRV 15
+L RS R++V +CP AG T + S L + GC +I R+
Sbjct: 953 QLVRSRRRLVVSGECPVAGETNRWSRFRLQFPVPDGCDLKAIQARL 998
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 46 P*PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDL 165
P PS + P S N S F+P R SLL P L
Sbjct: 721 PSPSPSPRTPTRDASPGQVNQDSSQEFQPRRISLLAPFSL 760
>01_06_0511 +
29937167-29937264,29937362-29937577,29937938-29938093,
29939614-29939671,29939768-29940085,29940160-29940399,
29940489-29940587,29940676-29940711,29941183-29941368,
29941442-29941709,29941805-29941911
Length = 593
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 109 QSCTIFRPERSSLLQPLDLNGQVFSYPPKS 198
QSC +F+ L+ PL + S+PPK+
Sbjct: 346 QSCYLFQGVSDKLVLPLVAEMKAESFPPKA 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,228,358
Number of Sequences: 37544
Number of extensions: 103295
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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