Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o03
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_9889| Best HMM Match : MFMR (HMM E-Value=6.2)                       26   4.1  
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_31981| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)                  25   7.2  
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  25   9.6  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      25   9.6  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 164 RSRGCRRLDRSGRKIVQDCPFAGRTEQESSGMLIVQL 54
           RSR  RR DRS  + V   P  GRT   SS +L V++
Sbjct: 21  RSRR-RRRDRSASRSVSRSPSPGRTSMSSSQVLQVKM 56


>SB_9889| Best HMM Match : MFMR (HMM E-Value=6.2)
          Length = 286

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 73  PELSCSVRPAN-GQSCTIFRPERSSLLQ-----PLDLNGQVFSYPPKSVR 204
           P LSC   PA+ G     F P+  SL       P   N  +FS+PP  ++
Sbjct: 178 PALSCMAVPASPGYFTGAFIPQSPSLPPTPNSVPPSSNNSIFSFPPNMIQ 227


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 154 PLDLNGQVFSYPP-KSVRVTVVGPP*K 231
           P DL G  F YP  KSVRVT+ G P K
Sbjct: 624 PKDLRGS-FVYPDIKSVRVTIDGMPNK 649


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 79   LSCSVRPANGQSCTIFRPERSSLLQPLDLNGQ 174
            LS + +P NG +CT+   ++   +  L L G+
Sbjct: 940  LSSAFKPGNGHTCTVLDVDKDHEVLNLSLTGK 971


>SB_31981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 223 EVRRQSRALI*EDRRRLDRSGREVVEDLTA 134
           EV RQS A    DR+R++ SG   +  L+A
Sbjct: 180 EVNRQSEAANRADRQRIEASGSSQIISLSA 209


>SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)
          Length = 651

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 166 NGQVFSYPP-KSVRVTVVGPP*K 231
           + + F YP  KSVRVT+VG P K
Sbjct: 59  DSEKFVYPDIKSVRVTIVGMPNK 81


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 52  PSCTISIPELSCSVRPANGQSCT 120
           P  T++IP  S SV+P  G S T
Sbjct: 24  PQTTVAIPPQSDSVKPKQGSSKT 46


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 52  PSCTISIPELSCSVRPANGQSCT 120
           P+CT  + E + S    NG SCT
Sbjct: 490 PTCTTDVNECAASPPCVNGGSCT 512


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 66   QHSRALLFRPPRKRTVLYNLSTRAVK 143
            QH R L F  P K+ VLY+   + V+
Sbjct: 1208 QHQRYLKFLRPPKKAVLYDSDVKRVQ 1233


>SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 27 NTIWLTALTKLHDQHSRALLFR 92
          +T+WL+     HD+ S A LFR
Sbjct: 31 STVWLSDYESEHDKKSEAELFR 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,788
Number of Sequences: 59808
Number of extensions: 110399
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 16,821,457
effective HSP length: 56
effective length of database: 13,472,209
effective search space used: 296388598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)