Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o03
         (236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    28   0.77 
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    28   0.77 
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    28   0.77 
L14324-7|AAA28181.2|  565|Caenorhabditis elegans Prolyl carboxy ...    27   2.4  
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AL132902-3|CAC14419.1|  271|Caenorhabditis elegans Hypothetical ...    25   9.5  
AL132902-2|CAB81987.1|  271|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 214  RQSRALI*EDRRRLDRSGREVVEDLTARVER 122
            ++ ++L+ E R++LD   REV+E+L  + E+
Sbjct: 1377 KEVKSLLAEARKKLDEENREVMEELRKKKEK 1407


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 214  RQSRALI*EDRRRLDRSGREVVEDLTARVER 122
            ++ ++L+ E R++LD   REV+E+L  + E+
Sbjct: 1377 KEVKSLLAEARKKLDEENREVMEELRKKKEK 1407


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 214  RQSRALI*EDRRRLDRSGREVVEDLTARVER 122
            ++ ++L+ E R++LD   REV+E+L  + E+
Sbjct: 1377 KEVKSLLAEARKKLDEENREVMEELRKKKEK 1407


>L14324-7|AAA28181.2|  565|Caenorhabditis elegans Prolyl carboxy
           peptidase like protein1 protein.
          Length = 565

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 120 CTRLSVCGADGTGELGNADRAAW 52
           C   S+CG  GTG LG  D   W
Sbjct: 351 CIDFSICGDQGTGGLG-GDELGW 372


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +1

Query: 70  IPELSCSVRPANGQS------CTIFRPERSSLLQPLDLNG 171
           +P +S S  P  G+S      C++F P + S   PL  NG
Sbjct: 557 LPGISSSQSPMKGESWNSFRSCSLFSPIKPSKRAPLSSNG 596


>Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical
           protein F54F7.8 protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 163 LNGQVFSYPPKSVRVTVVGP 222
           LN  VFS PP  V V+V  P
Sbjct: 69  LNSSVFSLPPPPVGVSVPNP 88


>AL132902-3|CAC14419.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71A12B.3 protein.
          Length = 271

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  LTKLHDQHSRALLFRPPRKRTVL 116
           + +LH Q +  L+F PPR+RT +
Sbjct: 210 ILRLHQQDAN-LMFGPPRRRTTV 231


>AL132902-2|CAB81987.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71A12B.2 protein.
          Length = 271

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  LTKLHDQHSRALLFRPPRKRTVL 116
           + +LH Q +  L+F PPR+RT +
Sbjct: 210 ILRLHQQDAN-LMFGPPRRRTTV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,084,245
Number of Sequences: 27780
Number of extensions: 82164
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)