Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o03
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   4.7  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              20   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  PSMNTIWLTALTKLHDQHSRALLFRPP 98
           P+  T+ +T+L  L  QH+++    PP
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPP 300


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +3

Query: 18  PSMNTIWLTALTKLH 62
           P  NT+W+  +  +H
Sbjct: 563 PFSNTLWILVMVSVH 577


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 79  LSCSVRPANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKSVRVTVVGPP 225
           +SCS +  + ++       RSSL+  +    +  SY   S+ V+V   P
Sbjct: 362 VSCSPQTVHPETIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKP 410


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 55  SCTISIPELSCSVRPA 102
           +C I  P + C  RP+
Sbjct: 12  TCLICSPSVHCGTRPS 27


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 12  YNPSMNTIWLTALTKLHDQHSRALLFRPP 98
           YN +     +T +TK    H+  ++++PP
Sbjct: 110 YNNADGNYEVTIMTKAILHHTGKVVWKPP 138


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 128 DPSGQVFYNLST*TVKSSPILLNQCA*LSSDLHKKK 235
           DP  +   N     +K + +L N    +S D H K+
Sbjct: 200 DPDSKECSNQEYEIMKDNLLLYNHARLMSQDNHSKE 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,207
Number of Sequences: 438
Number of extensions: 965
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)