Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8n23
(456 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) 29 2.4
SB_56321| Best HMM Match : DM (HMM E-Value=3.2) 27 7.4
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7) 27 9.7
SB_19934| Best HMM Match : Neur_chan_memb (HMM E-Value=2.7e-16) 27 9.7
SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8) 27 9.7
SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4) 27 9.7
SB_51411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3) 27 9.7
>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
Length = 1120
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 308 RVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIINVFHVPLFERVRNKQYIS 150
R L +ISV+H A+ HR N + I + +V R+RNK+Y+S
Sbjct: 832 RRLSVISVRH---VCTAVCLHRIRNKRRLSVISVRHVCTAVCLHRIRNKRYLS 881
>SB_56321| Best HMM Match : DM (HMM E-Value=3.2)
Length = 270
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 248 HRTFNYTVIFQICIINVFHVPLFERVRNKQY 156
H +++ + Q +I++ HVP+ ERV+ +QY
Sbjct: 3 HNDWDWRTLCQDFMIDI-HVPVLERVKEEQY 32
>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 248 HRTFNYTVIFQICIINVFHVPLFERVRNKQY 156
H +++ + Q +I++ HVP+ ERV+ +QY
Sbjct: 54 HNDWDWRTLCQDFMIDI-HVPVLERVKEEQY 83
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 166 TSNTLAVRCIMLKINSADAELYRPRFIFCA 77
TSN AV C + IN EL +P F CA
Sbjct: 420 TSNGNAVACQVKAINMTVRELVKPMFSACA 449
>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
Length = 464
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 425 LYTIFLVILVVIINYHTYFFA*QFNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIA-T 249
L+T L + + I + H +V S+ T H H R L + V H +I I
Sbjct: 79 LFTRVLFLSITIAHAHRSLLITIVHVHRSLSITIVHVH-RSLSITIVHAHRSLSITIVHV 137
Query: 248 HRTFNYTVI 222
HR+ + T++
Sbjct: 138 HRSLSITIV 146
>SB_19934| Best HMM Match : Neur_chan_memb (HMM E-Value=2.7e-16)
Length = 314
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 402 TCCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAA 295
TCC + S I+F ++R + + LPC AA
Sbjct: 99 TCCAHPFSDIVFSFALERLPLYHVIYVVLPCVIIAA 134
>SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)
Length = 437
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 216 LKNYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEV 320
L++YS+ +G+ C GD L V DR+ L +M +
Sbjct: 365 LQDYSIKDGSEGCLGDPLNSPVHDRDDLGEIEMNL 399
>SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)
Length = 197
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 105 NSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNYSVIE--GAMCCNGDCLAVV 278
NSA+ EF F N N ++ ++ I N++L NY++ E + C + + V
Sbjct: 88 NSAAKEFTFYTGACAGNDDAALNQIRHNFLEAIKNSHLANYALCEVSQGLDCVVENVKVY 147
Query: 279 VLDRNQLQNTDMEVLESLEYTSDNVE 356
+R++ N + + S ++ ++++
Sbjct: 148 CGERSKRSNDPPQRIISFDFVINDLK 173
>SB_51411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 66 KCLVAQKINLGLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNYSVIEGA 245
K L AQ N L++ +++FN+ + +V+ +PN+L R I+ YS G
Sbjct: 25 KKLTAQDWNNVLFSDKCHKYLFNLPNPKNDVVWLPNSLWSR----IFRRQKDEYSA--GF 78
Query: 246 MCCNGDCLAVV 278
+C C A +
Sbjct: 79 LCDGESCGAEI 89
>SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3)
Length = 156
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 158 YISRQMHNVKNKLGRRRVI*TQVYFLRNQAFCASHHTLHTQL 33
YISR+ H + N+LG+ + Q + N A+ H TQL
Sbjct: 63 YISRKKHCITNRLGKAK----QEKIIMNPPLLANIHKQSTQL 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,345
Number of Sequences: 59808
Number of extensions: 324260
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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