Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n17
         (345 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   2.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   2.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   4.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   4.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   6.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   8.2  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 RTIKLNGMRSSKKIKRQTRWSLVCY 175
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 104 KTKMIAHLKDKKKIRAKKRWSQCMY 128


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 RTIKLNGMRSSKKIKRQTRWSLVCY 175
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 418 KTKMIAHLKDKKKIRAKKRWSQCMY 442


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 RTIKLNGMRSSKKIKRQTRWSLVCY 175
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 651 KTKMIAHLKDKKKIRAKKRWSQCMY 675


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 RTIKLNGMRSSKKIKRQTRWSLVCY 175
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 651 KTKMIAHLKDKKKIRAKKRWSQCMY 675


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 243 HPQMHNFIVPPV 208
           HPQ+H+   PP+
Sbjct: 86  HPQLHSHHGPPI 97


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 243 HPQMHNFIVPPV 208
           HPQ+H+   PP+
Sbjct: 86  HPQLHSHHGPPI 97


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 243 HPQMHNFIVPPV 208
           HPQ+H+   PP+
Sbjct: 86  HPQLHSHHGPPI 97


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 243 HPQMHNFIVPPV 208
           HPQ+H+   PP+
Sbjct: 86  HPQLHSHHGPPI 97


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 NGMRSSKKIKRQTRWSLVCYFTKIQKY 196
           N + ++ K K +  + +VCY+T   +Y
Sbjct: 74  NSLSATSK-KDKDGYKVVCYYTNWSQY 99


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 129 ERMPFNFIVRQLHSP 85
           +R+P NF   Q++SP
Sbjct: 50  QRLPANFSFGQVNSP 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,696
Number of Sequences: 336
Number of extensions: 1695
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)