Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n17
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   1.4  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   2.5  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   4.4  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.4  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    24   5.8  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    24   7.6  

>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 92  CNCRTIKLNGMRSSKKIKRQ 151
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 94  QLPY-DKIKRHALEQENKTPNALESCVLFYKDS--EIRITYNRGDYEIMHLRMSGP--LI 258
           Q+ Y ++ ++  LE EN+  N      L    S  E+R+ +NR ++ + +  +SGP  + 
Sbjct: 62  QVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRIT 121

Query: 259 QPNTIYY 279
            P  I+Y
Sbjct: 122 VPPVIFY 128


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 175 FYKDSEIRITYNRGDYEIMHLRMSGPLIQPNTIYYS*IRIIIKLFVY 315
           F   SE  +  N  DY  ++L +    + P+ +YY+ I+   + F+Y
Sbjct: 259 FLTSSETDVPKNINDY--IYLLIDDRFVPPDRVYYTDIKHHFRKFLY 303


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 177 LQRFRNTHHLQQGGL*NYAFEDVRTFN 257
           LQ  R  + +  GGL  + FED+  FN
Sbjct: 176 LQSLRKEYLIVSGGLNIHTFEDLSAFN 202


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 10  SRLSGHIKVPNGVRVEKLR 66
           S+  G IKVP GVRV  +R
Sbjct: 602 SKALGSIKVPEGVRVNIMR 620


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 23  DT*RCRTASVLKNCDPTCLF-TGLCNCRTIKLNGMRSSKKIKRQTRWSLVCYFTK 184
           DT +     V   C+ + +F + +C CR     G+  + K  +     LV YF K
Sbjct: 260 DTSKSLAVRVHDECNGSDVFQSDICTCRPYLTFGIEEAAKEAQNGGAGLVVYFRK 314


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 IKRHALEQENKTPNALESCVL 174
           +KR+  + + K PNA + C+L
Sbjct: 380 MKRYVAKHKPKNPNAAQVCIL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,365
Number of Sequences: 5004
Number of extensions: 25925
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)