Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n17
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    29   1.3  
12_02_0050 + 12892198-12892252,12892359-12892499,12893081-128932...    26   9.1  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    26   9.1  
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702...    26   9.1  

>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 7   ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 114
           AS + G  K    ++ + L+PN+ VYGT+   Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435


>12_02_0050 +
           12892198-12892252,12892359-12892499,12893081-12893237,
           12894056-12894128,12894506-12894514
          Length = 144

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 86  GLCNCRTIKLNGMRSSKKIKRQTRWSLVCYFTKIQKYASLTTG 214
           G  +CRT+K +G  S KK++        CY+   ++ +S+  G
Sbjct: 17  GAISCRTVKGSGSSSRKKMETADDHE-YCYYYYEEQASSVAVG 58


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 19   SGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCV 171
            S H+  P+G  VE L     ++    L YD   +H L  ++     L+  V
Sbjct: 1748 SVHVGSPSGQHVEALGSTSPLHSKANLSYDIAGKHGLFDDSDKGGNLQFMV 1798


>01_06_0782 +
           31969677-31969767,31969863-31969960,31970059-31970235,
           31970367-31970467,31970626-31970701,31970827-31970886,
           31970979-31971215,31971612-31971686,31971981-31972039,
           31972110-31972201,31972463-31972623,31972964-31973176
          Length = 479

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 289 LFSCNILCWVELKVLTSSNA*FHSP 215
           LF C  L W   ++LT+  A  HSP
Sbjct: 219 LFICIALVWAYAQILTAGGAYKHSP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,962
Number of Sequences: 37544
Number of extensions: 155568
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)