Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n17
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        29   1.3  
SB_38205| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)                   26   9.4  

>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 106 DKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRG 216
           DK+KR+  E E +T   LE C++   D E   T+++G
Sbjct: 117 DKVKRYTREDEQQTVERLERCLVKRCDDE---TFSKG 150


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 122 MRSSKKIKRQTRWSLVCYFTKIQKYASLTTGGT 220
           ++ + K+K + RWS V Y + I  Y   T G T
Sbjct: 495 LKDNLKVKNKKRWSQVMYMSYILDYKEGTMGST 527


>SB_38205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 62  NFSTRTPFGTFMCPDSRDAS 3
           NF  R PF   +CPD R  S
Sbjct: 483 NFMPRMPFDQLLCPDHRRPS 502


>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
          Length = 583

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 105 VRQLHSPVNRHVGSQFFNTDAVRHLYVSRQP 13
           ++  H P++    ++F    A+RHL +SR P
Sbjct: 207 LKAYHCPISWQSPTEFAKFTALRHLDISRNP 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,926
Number of Sequences: 59808
Number of extensions: 202521
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)