Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8n17
(345 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 2.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 2.7
Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z83110-5|CAB05527.1| 387|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 26 6.3
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 26 8.3
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 26 8.3
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 26 8.3
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 14 GCRDT*RCRTASVLKNCDPTCLFTGLCNCRTIK 112
GCR T C + S L C P C T C T K
Sbjct: 233 GCRST--CSSTSTLSVCIPACQQTCRSTCSTAK 263
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 55 EKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRI 201
E+L+ N + G +DK+ +HA+++ + L C L SE I
Sbjct: 2901 ERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEI 2949
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 55 EKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRI 201
E+L+ N + G +DK+ +HA+++ + L C L SE I
Sbjct: 2901 ERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEI 2949
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 55 EKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRI 201
E+L+ N + G +DK+ +HA+++ + L C L SE I
Sbjct: 2901 ERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEI 2949
>Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical
protein R08H2.9 protein.
Length = 433
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 220 SPPCCK*CVFLNL--CKIAHKTPTRLAFYFLARAHAV*FYRTAI-AQSRKQTC 71
S CC F+N+ C++ H P + LA + F+R AI ++ K+ C
Sbjct: 57 SASCCLLMHFMNIPWCEVCHGAPKGAQYGALACLGCIVFFRRAIVGENIKRKC 109
>Z83110-5|CAB05527.1| 387|Caenorhabditis elegans Hypothetical
protein F57C2.5 protein.
Length = 387
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 108 IVRQLHSPVNRHVGSQFFNTDAVRHLYV 25
IVR LH +HVG T+ HLY+
Sbjct: 347 IVRSLHDVTGKHVGDASQVTEHNGHLYI 374
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -2
Query: 137 SCSSACRLILSYGNC-TVP*TDMLGRNFSTRTPFGTFMC 24
+C S C+ C P +G NF TPF T+ C
Sbjct: 367 NCLSLCKAKYFMNQCGCTPALYNIGNNFQECTPFETYNC 405
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 49 RVEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNA 156
+ + P +S+YG + +D + + AL + +PNA
Sbjct: 410 KYQHAEPRLSIYGRSKNEWDNLAKWALTHDVWSPNA 445
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 49 RVEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNA 156
+ + P +S+YG + +D + + AL + +PNA
Sbjct: 473 KYQHAEPRLSIYGRSKNEWDNLAKWALTHDVWSPNA 508
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 49 RVEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNA 156
+ + P +S+YG + +D + + AL + +PNA
Sbjct: 434 KYQHAEPRLSIYGRSKNEWDNLAKWALTHDVWSPNA 469
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,678,009
Number of Sequences: 27780
Number of extensions: 153724
Number of successful extensions: 342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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