Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n16
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.3  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   3.9  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   5.2  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   6.9  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   6.9  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   9.1  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 140 TSESDKIDRASREPLDLGESEEKASYVVSYK 48
           +S+   +DR + +P +LGE+     Y+ +YK
Sbjct: 90  SSDDSSVDRLAGDPFELGENFNLKHYLRAYK 120


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 92  LGESEEKASYVVSYKQKKFHFFH 24
           LG+S E   ++  + QK+FH  H
Sbjct: 44  LGDSAETIEFISDFNQKRFHSTH 66


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -1

Query: 486 NGFSSLKISAILLCSLRNSVCSMAKVGVWFTRRSPVKAIDNRVAENSMIII 334
           NG S      I+LC    ++    K  +W  ++   K I +   + S+  I
Sbjct: 344 NGISHRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFI 394


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 301 PSYPLSHDILRNYNHRIFGNSII 369
           P  PL+ D++ +YN R++G S I
Sbjct: 791 PIIPLNDDMVLSYNKRVYGVSQI 813


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 371 IALTGDLRVNQTPTLAMLHTLFLREHNRIADILSELNPL 487
           + + GDL     P+L +   +FLR    I   L  L PL
Sbjct: 115 LVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFALFVLTPL 153


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 30  EVKLFLFIRNDIARLLLALSKVE 98
           E K+FL +R D+ + LLA++ ++
Sbjct: 72  EQKMFLGVRADVGKYLLAVASIQ 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,059
Number of Sequences: 5004
Number of extensions: 47105
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)