Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n16
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762...    50   2e-06
01_01_0407 - 3067071-3070085                                           31   0.76 
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544...    29   2.3  
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121...    29   4.1  
12_01_0023 - 173691-174119                                             28   5.4  
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494...    28   5.4  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    28   5.4  
02_01_0091 + 646299-649082                                             28   7.1  

>12_02_0196 -
           15374814-15374997,15375304-15375547,15376035-15376237,
           15377275-15377502,15377674-15377819,15378020-15378233,
           15378410-15378543,15378986-15379135,15379892-15380155,
           15380962-15381051
          Length = 618

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 40/65 (61%)
 Frame = +2

Query: 371 IALTGDLRVNQTPTLAMLHTLFLREHNRIADILSELNPLWSDEKLYQETRKIVIAEIQHI 550
           +AL+GD+R N    +++L  LF++EHN + D + E +P  SDE+LY+  + +  A I  +
Sbjct: 252 VALSGDIR-NSWAGVSILQALFVKEHNAVCDAIKEEHPNLSDEELYRYAKLVTSAVIAKV 310

Query: 551 TYQEW 565
              +W
Sbjct: 311 HTIDW 315


>01_01_0407 - 3067071-3070085
          Length = 1004

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 458 LSCCALSGIVCAAWPR 411
           LSCCALSG +CA  PR
Sbjct: 236 LSCCALSGPICATLPR 251


>01_05_0474 -
           22552599-22552687,22553494-22553631,22553766-22554447,
           22555120-22555167,22555395-22556042,22556960-22557310,
           22558622-22558690
          Length = 674

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 8   VQLRARERSETFFVYKKRHSSPSPRSLQGRVVRETLCLFYHSRSS*IIC 154
           ++LR  + S+  F   + H S S RS +  VV+ ++ +  H  S  I C
Sbjct: 158 LRLRHNQNSQNAFSMDQNHESSSRRSQKNTVVKLSMRMVSHKDSQKIFC 206


>02_02_0503 +
           11008475-11008793,11009983-11010140,11011863-11012102,
           11013502-11013757,11013846-11014057,11014413-11014453,
           11014531-11014567
          Length = 420

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 468 KISAILLCSLRNSVCSMAKVGVWFTRRSPVKAIDNRVAEN 349
           K   + +C L    CS A   VW+    P  A++  +A+N
Sbjct: 338 KYGGLFMCVLPQMACSDASSHVWWDEFHPTDAVNRILADN 377


>12_01_0023 - 173691-174119
          Length = 142

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 452 RIADILSELNPLWSDEKLYQETRKIVIAEIQHITYQEWLP 571
           R AD+L+     WSD+ + QE    ++  + H +Y  W P
Sbjct: 65  RAADVLN-----WSDKPVCQEKAAYILMVLAHRSYASWSP 99


>01_06_1585 -
           38448403-38448512,38448836-38448916,38449388-38449475,
           38449571-38449666,38449823-38449879,38449960-38450466,
           38450701-38451393,38451612-38451683
          Length = 567

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/89 (28%), Positives = 37/89 (41%)
 Frame = +1

Query: 292 INRPSYPLSHDILRNYNHRIFGNSIINCFNR*PPRKPNSHLGHAAHTIPERAQQDSGYFK 471
           + RPS   S        HRI   SI    +   PR+P++   H   T  ERA++ +    
Sbjct: 304 VRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTT--ERARKQADVDT 361

Query: 472 RTEPVVERRKTVSRDAKDRYS*DTTYHLP 558
              P    R+ V++ + D     TT H P
Sbjct: 362 PRRPSTSERRAVNKGSADM----TTTHRP 386


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 PSYPLSHDILRNYNHRIFGNSIINCFN 381
           P++   +DI RN +  I GNS  NCF+
Sbjct: 405 PTFHKKYDIPRNGSSSILGNSSRNCFS 431


>02_01_0091 + 646299-649082
          Length = 927

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 HRIFGNSIINCFNR*PPRKP-NSHLGHAAHTIPERAQQDSGYF 468
           H++FG  I +C      RK    HL  AA   P R + D  YF
Sbjct: 550 HKLFGKPIEHCQVDSQNRKVLEQHLACAASEYPLRQEHDESYF 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,478
Number of Sequences: 37544
Number of extensions: 292278
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)