Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n16
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 LARPKLYVFSLAVTNLSQVKFYSQQDF 212
           + RPK++VFSL    L  +  + Q  F
Sbjct: 147 ICRPKIHVFSLHDNKLITMYRFPQNQF 173


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 437 LREHNRIADILSELNPLWSDEKLYQETRKIVIAEIQHITYQEWLP 571
           + E N    I   LN  W DE+L     + V+        + W+P
Sbjct: 75  ISEVNMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVP 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 140  TSESDKIDRASRE 102
            T +S K+DR+SRE
Sbjct: 1414 TRDSTKLDRSSRE 1426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,927
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)