Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n15
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      200   1e-51
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    77   1e-14
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     31   0.86 
SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)                 29   4.6  
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)                    28   6.1  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    28   6.1  
SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 28   8.0  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  200 bits (487), Expect = 1e-51
 Identities = 97/136 (71%), Positives = 114/136 (83%)
 Frame = +3

Query: 246 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 425
           G SR+ SRTD EAV REEEAI  D L+VAQMKELRD+A+ + FQ EVNRMMKLIINSLYR
Sbjct: 39  GKSRDASRTDDEAVQREEEAIKLDGLNVAQMKELRDKAEKHEFQAEVNRMMKLIINSLYR 98

Query: 426 NKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEXDKRLLHIIDSGVGMT 605
           NKEIFLRELISN SDALDKIRLMSLTD+   ++  ELSI+IKA+ +  +LH+ D+G+GMT
Sbjct: 99  NKEIFLRELISNSSDALDKIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMT 158

Query: 606 RADLINNLGTIAKSGT 653
           + +LI NLGTIAKSGT
Sbjct: 159 KEELIKNLGTIAKSGT 174


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
 Frame = +3

Query: 381 EVNRMMKLIINSLYRN-KEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAE 557
           +V   ++L+++S      ++F+RE+ISN SDAL+K+R   LT + V E    L I I+ +
Sbjct: 66  DVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVRHFFLTGKDVSETETSLEIMIETD 125

Query: 558 XDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQD 680
            +     I D+GVGMT  +L+++LG IAKSG+  F+ K+++
Sbjct: 126 QEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLKN 166


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +3

Query: 333 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNK----EIFLRELISNGSDALDKIRLMSL 500
           ++  L DR +      E  R ++ + NSLY  +    E+ +   + +G DAL ++  +  
Sbjct: 169 EVSRLNDRLREQGVDMETERKLEQVNNSLYSRETAKVELEMHSSLGDGKDALRRLDRLDR 228

Query: 501 TDRGVLEANPELSIRIKAEXDKRLLHIIDSG 593
           T   + E     S  + +  D+R +   D G
Sbjct: 229 TINVLSENQRSQSHSLSSMVDERDMRTADLG 259


>SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)
          Length = 425

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 674 HLGQEVRGAGLGDGAEVVDEVGARHADAGVDDVQ 573
           +LG +  G G G G +++ E GA + D G  +V+
Sbjct: 317 YLGFQSIGNGKGSGDKIIQEFGALYLDGGFKNVE 350


>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
          Length = 729

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 249 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 362
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 418 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 455


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 249 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 362
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 420 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 457


>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 294 EEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKE 434
           +E+  S   + V  MK+++++   Y   TE+ R+ KL+ + L  NK+
Sbjct: 15  DEKGKSSGDMYVKIMKKIQEKGTGY-IDTEITRVKKLLKDKLTENKK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,012
Number of Sequences: 59808
Number of extensions: 271465
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)