Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8n15
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 190 8e-49
Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 128 4e-30
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 95 4e-20
U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 95 4e-20
AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock pr... 95 4e-20
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 32 0.44
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 29 4.1
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 28 5.4
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 28 5.4
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 28 5.4
Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 190 bits (463), Expect = 8e-49
Identities = 93/141 (65%), Positives = 114/141 (80%)
Frame = +3
Query: 258 EGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEI 437
E + + + REE++I D LSV+Q+KELR +A+ + FQ EVNRMMKLIINSLYRNKEI
Sbjct: 28 EDAPKETKEETREEDSIKLDGLSVSQIKELRSKAEKHEFQAEVNRMMKLIINSLYRNKEI 87
Query: 438 FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEXDKRLLHIIDSGVGMTRADL 617
FLRELISN SDALDKIRL+SLTD L E+S++IKA+ + RLLHI D+GVGMTR DL
Sbjct: 88 FLRELISNASDALDKIRLLSLTDPEQLRETEEMSVKIKADRENRLLHITDTGVGMTRQDL 147
Query: 618 INNLGTIAKSGTADFLSKMQD 680
INNLGTIA+SGT++FLSK+ D
Sbjct: 148 INNLGTIARSGTSEFLSKLMD 168
>Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical
protein C47E8.5 protein.
Length = 702
Score = 128 bits (309), Expect = 4e-30
Identities = 59/111 (53%), Positives = 82/111 (73%)
Frame = +3
Query: 345 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 524
+ + A+ + FQ E+ ++M LIIN+ Y NKEI+LRELISN SDALDKIR +LT+ L+
Sbjct: 1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDT 60
Query: 525 NPELSIRIKAEXDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQ 677
EL I+I +++ L I+D+G+GMT+ADL+NNLGTIAKSGT F+ +Q
Sbjct: 61 GKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQ 111
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/116 (42%), Positives = 69/116 (59%)
Frame = +3
Query: 333 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 512
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 513 VLEANPELSIRIKAEXDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQD 680
+ P IRI DKR + D+G+GM R DL+ LGTIAKSG+ DF+ ++
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKE 146
>U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical
protein R151.7b protein.
Length = 479
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/116 (42%), Positives = 69/116 (59%)
Frame = +3
Query: 333 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 512
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 513 VLEANPELSIRIKAEXDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQD 680
+ P IRI DKR + D+G+GM R DL+ LGTIAKSG+ DF+ ++
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKE 146
>AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock
protein 75 protein.
Length = 222
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/116 (42%), Positives = 69/116 (59%)
Frame = +3
Query: 333 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 512
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 513 VLEANPELSIRIKAEXDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQD 680
+ P IRI DKR + D+G+GM R DL+ LGTIAKSG+ DF+ ++
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKE 146
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 31.9 bits (69), Expect = 0.44
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = +3
Query: 246 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 425
G G D ++V EEE I D L + + +RD + E+ R K + S +
Sbjct: 122 GRRGRGDAADDDSVPMEEEDIPVDILENIRGRTIRDHVSDEAVAKEIERRFKNFLRSFHE 181
Query: 426 --NKEI-FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIR-IKAEXDKRLLHIID 587
NK+ +++ + S +D + + +S TD + + N E +I E +L I+D
Sbjct: 182 PGNKQTKYIQMIKSMAADNRESLE-VSFTD--LSDDNGEQNISYFLPEAPNEMLAIMD 236
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 297 EEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKL 404
E SPD V Q + LR + YT + E N +M+L
Sbjct: 316 ESDTSPDQAFVHQWRHLRHTKEQYTLRYESNYLMEL 351
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 545 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 366
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 365 VLRAVAQLLHLRHAQRVRGDGLLLAQ 288
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 545 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 366
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 365 VLRAVAQLLHLRHAQRVRGDGLLLAQ 288
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 545 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 366
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 192 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 248
Query: 365 VLRAVAQLLHLRHAQRVRGDGLLLAQ 288
L + L H Q V+ LLAQ
Sbjct: 249 TLMEELEFLRRVHEQEVKELQALLAQ 274
>Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical
protein B0272.2 protein.
Length = 213
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 399 KLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGV 515
+L++N ++ L +LIS GS L+ ++ L RGV
Sbjct: 123 ELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGV 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,338
Number of Sequences: 27780
Number of extensions: 202112
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -