Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8n09
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 40 4e-04
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 34 0.016
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 32 0.086
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.3
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 4.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 5.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 7.5
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.5
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 103 IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 219
I+ L MGFP R ++AL T E AM WL H ED
Sbjct: 582 IEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMED 620
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 340 LKCDECGKLFKNQDEIEYHAAKTNHSSF 423
LKC EC KL + + E+H+ KT+H F
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQF 30
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.9 bits (69), Expect = 0.086
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 103 IQTLIEMGFPKERAEKALAVTNY 171
+Q L+ MGFP+E+A AL TNY
Sbjct: 794 LQELLSMGFPREKAVIALEATNY 816
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 175 PYNWSRLKLFLLVLWEN-PSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLLS 20
P W +LK +++LW++ P+ S + + + + +M++ K T +F ++S
Sbjct: 344 PTEWDKLKPTIILLWKDFPNYSTLLSIMQERNSKAMYMYKPVTSSIRFLQIIS 396
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 148 FLLVLWENPSRSMSVFLPLFKFANSMFIVK 59
FL VLW NP +S+ + SMF ++
Sbjct: 353 FLWVLWRNPLPQLSIISHIILSPTSMFDIR 382
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 334 KSLKCDECGKLFKNQDEIEYH 396
K +C+ C K +KN + ++YH
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH 417
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 334 KSLKCDECGKLFKNQDEIEYHAAKTNHSS 420
KS C EC K FK + + H ++ H+S
Sbjct: 421 KSFVCPECSKKFKRSEHLRRH-IRSLHTS 448
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -1
Query: 172 YNWSRLKLFLLVLWENPSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLLS 20
+N ++ L +++ P+ + S + F+F +MFI+ L F F +LL+
Sbjct: 506 FNTTKGALVRSMIFPKPT-NFSFYRDSFRFITAMFIIALIGFVFSSINLLT 555
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 100 EIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNS 249
++QT+IE + ++ L+ T +EP E L+ + + EP N+
Sbjct: 379 QVQTIIEQSIQVDGYDEPLSTTTPTLIEPIQETLMTQSP--IIECEPFNT 426
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 130 PKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNSQAGESSA 270
P RA + L +N PAME L A LA+ S+P S SSA
Sbjct: 304 PPFRASEPLPSSNIIP-NPAMERLKNGASKLAIESQPFKSAEPLSSA 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,825
Number of Sequences: 5004
Number of extensions: 36721
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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