Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8n08
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    26   5.5  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        26   5.5  
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 73  DKLFAIVNNVAAERRLVDQIHICL 2
           ++LF I+ N ++ RRLVD    CL
Sbjct: 558 ERLFFILENFSSNRRLVDLASQCL 581


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  VDESAFGSNVINYCEQFITAIFEIFTLSSK 109
           + +++F   +INYC + +  IF   TL S+
Sbjct: 216 IQDNSFEQFIINYCNEKLQQIFIELTLKSE 245


>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 718

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 51  LTIANSLSRPFSKFLRSAVKSLWPCPSIGKTII*VYF*NICT 176
           L +A+S SR F +    A++ L P PS    +    F  +CT
Sbjct: 155 LNLAHSFSRLFMRKHSHALRHLLPLPSFDSLVKQTTFVMLCT 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,188,639
Number of Sequences: 59808
Number of extensions: 119222
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 55
effective length of database: 13,532,017
effective search space used: 297704374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)