Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m22
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             181   5e-46
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               41   7e-04
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 32   0.45 
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   4.2  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 27   9.7  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)                   27   9.7  
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           27   9.7  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  181 bits (440), Expect = 5e-46
 Identities = 96/197 (48%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
 Frame = +3

Query: 66  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 245
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 246 SYT------PAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXX 407
           SY       P E+K+  +   P                     +DLFGS           
Sbjct: 61  SYGEGKQNFPGEKKS-VESFGPAGAASEQKPAPADDNDDDE--IDLFGSDDEEEEKEAAR 117

Query: 408 XXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKL 587
                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKL
Sbjct: 118 IRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKL 177

Query: 588 VPVGYGINKLQIMCVIE 638
           VP+ YGI KLQI  V+E
Sbjct: 178 VPLAYGIKKLQITVVVE 194


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 147 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 251
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +3

Query: 423 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 590
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 591 PVGYGINKLQIMCVIE 638
            + YG+ KLQI CVIE
Sbjct: 120 EIAYGLKKLQITCVIE 135


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 582 KLVPVGYGINKLQIMCVIE 638
           KLV + YG+ KLQI CVIE
Sbjct: 2   KLVEIAYGLKKLQITCVIE 20


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 99  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 194
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 285 CPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 142
           CP       PE    F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 568 CPPFGISSAPEV---FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 423  LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIE 554
            L A  D KS KPAL  K    + ++    E+ ++++EN+ R+IE
Sbjct: 1306 LDAGGDPKSSKPALQHKIQEEVGIRIVRLESALEKVENEKRSIE 1349


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 423 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKE 527
           LK  AD   KKP  +    ++ D  P D+E + KE
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 489 DVKPWDDETDMKEMEN 536
           DV+PWD  TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668


>SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)
          Length = 355

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 300 RSMGWCPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEK 154
           R++ W PE +  +Q +  ++  +T  +RG G    P  L     H  EK
Sbjct: 213 RALPWIPEKQLKMQRDTWRENKFTSCLRGFGGSEEPPHLTGASAHLREK 261


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 554 FNSAYLVFHFLHIGFIIPWLDIKENRGLGNEGWFLRLLVSICFQTFFSNSFSFCILFLVT 375
           F +  L+F F+ +  ++ W    ++     E WF ++L S+     F  +F F    LVT
Sbjct: 324 FTTHNLLFFFILLCMVLDWFQPAKSDTAKTELWFSQILASVL--VAFKFAFPFFSASLVT 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,761,166
Number of Sequences: 59808
Number of extensions: 357504
Number of successful extensions: 793
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)