Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m19
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.29
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 0.67
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 2.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 2.7
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 2.7
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 3.6
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 6.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.2
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 24 8.2
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.29
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 232 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 351
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 0.67
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 193 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 339
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 310 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 411
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 2.7
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 100 PILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNF 207
P+L T+ L +D P ++++ + +T ++NF
Sbjct: 1411 PMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNF 1446
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 2.7
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 175 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 336
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 337 ITEVE 351
+ E E
Sbjct: 65 LNESE 69
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 3.6
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 199 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 360
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 361 YLTLLLI-VEHAYLHYY 408
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 58 FVVAETNDTSIPGEPILFTEN 120
FVVAE + T+I G+ LFT++
Sbjct: 109 FVVAEGDKTAIHGKDTLFTKH 129
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 235 AKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITE 345
+ T+ A R +D++ KQP Y + SDF IT+
Sbjct: 398 SSTYKADDDSIYHRKEDFK--KQPSYPVLTSDFEITD 432
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 239 LAIRTLQLSFSKFTKASVSNSRLSILTIDGRSTEHNSTP 123
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 19 FHPLVTXFXXXMEFVVAETNDTSIPGEPILFTENEGV 129
FH + F +F +A TNDT++ + + G+
Sbjct: 398 FHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGI 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,257
Number of Sequences: 5004
Number of extensions: 24816
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -