Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m19
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   3.5  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   4.6  
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771...    27   6.0  
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223...    27   6.0  
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620...    27   6.0  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    27   8.0  

>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 187 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 351
           TE   N  + + N  I+K      +K+TTR DD  +  Q    M+LS+   T  E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 264 FALRGAKRLGYPHVAVIVFKVY*SLGVKLAA*HFNDRRSVDGAQQHPLVFXKQNGFSGNA 85
           F +RG K    PH  V+ F +   L     A H N+RR V G  +  L   +      NA
Sbjct: 700 FMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR-VRGEDEEALPDVESQKLESNA 758


>06_01_0993 +
           7710016-7710977,7711081-7711316,7711422-7711501,
           7711977-7712072,7712995-7713892,7713983-7714093,
           7714657-7714751
          Length = 825

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 188 VSNSRLSILTIDGRSTEHNSTPSFSVNKMG 99
           +SNSR++I +  GR++  +  PS    K G
Sbjct: 481 ISNSRININSASGRASNDSQAPSVQPQKCG 510


>02_01_0326 -
           2230617-2230735,2231430-2231493,2231646-2231849,
           2231945-2232016,2232293-2232458,2232543-2232758,
           2232873-2232949,2233056-2233151,2233237-2233280,
           2233435-2233522,2233805-2233886,2233961-2234091,
           2234264-2234350,2234804-2234887,2234985-2235144,
           2235251-2235414,2235757-2235762,2235823-2235879,
           2236159-2236278,2236387-2236496,2236587-2236689,
           2236789-2236842,2237106-2237168,2237258-2237325,
           2237412-2237469,2237684-2237750,2238233-2238309,
           2238433-2238516,2238652-2238828,2239010-2239144
          Length = 1010

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 292 SNKQPDYDMDLSDF 333
           SN+ P +DMDLSDF
Sbjct: 566 SNRAPTFDMDLSDF 579


>01_06_1254 +
           35761046-35761162,35761332-35761416,35761877-35762017,
           35762118-35762206,35762519-35762701,35763509-35763697,
           35763808-35763938,35764023-35764125,35765123-35765308
          Length = 407

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = +1

Query: 142 VDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMD 321
           VD      +  R+ ++EA  N E  N N     +   S  K    SDD + N   D D+D
Sbjct: 325 VDDAEAYDVYERQEESEA--NEEPSNKNQDEGPSSSTSNGKEVEESDDEDINIDDDLDID 382

Query: 322 LSDFSITEVEATQYLTLLLIVE 387
                + E+EA+   T + I E
Sbjct: 383 ----ELNELEASLSRTSIQIRE 400


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -3

Query: 272  VVFLRLEAPNVLAIRTLQLSFSKFTKASVSNSRLSILTID 153
            ++  R E  +VLA++   L FSK T   ++ ++ +++T++
Sbjct: 1162 LIIYRAEEADVLALKETLLQFSKATGLQINFAKSTMITLN 1201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,428,296
Number of Sequences: 37544
Number of extensions: 157051
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)