Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m19
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.29 
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   2.7  
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   3.6  
SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           27   8.2  
SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 172 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQP 306
           S E + +ALV   +DN N +IAK  G+S+  +T    +Y   K P
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEYHIVKNP 227


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -1

Query: 403  NANRHVRRSATELDIEWLQ-PQLC*NRSNPYR--NLVVYLTRNHRCASCFCA*RRQTSWL 233
            N   H+ R A ++  +    P  C  R   Y+  N +++ ++N +C    CA  +  +W 
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKIIHRSKNGKCYRAICAGGKIANWR 1364

Query: 232  SARC 221
            SA C
Sbjct: 1365 SAVC 1368


>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 191 SVSNSRLSILTIDGRSTEHNSTPSFSVNKMGSPGMLVSLVSATT 60
           S + + LS  T   +ST  ++ P F+VN++ +PG       ATT
Sbjct: 206 STTLTNLSGTTASDKSTAISTHPLFAVNEVKTPGQTTGPAQATT 249


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 67  AETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 174
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 247 GASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIV 384
           G SKRK+ TR  ++  N + DY +  S   +  +E    L ++L +
Sbjct: 18  GGSKRKHHTRLKEHTLNSKQDYKLCNSSLVMKSLEWRTVLFIVLCI 63


>SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 268 TTRSDDYESNKQPDYDMDLSDFSITEVEAT 357
           TT++    S KQP YD   ++F+I E   T
Sbjct: 22  TTKAGGTNSRKQPAYDTSRTEFNIDEGNVT 51


>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 185 SNSRLSILTIDGRSTEHNSTPSFSVNKMGSPGMLVSLVSATTNS 54
           S++ L+I   D  S   N T  F VN+ G P  L SLV+ATT S
Sbjct: 786 SSTDLTIQNDDMGSVSFNQT-LFVVNE-GDPHCLYSLVAATTRS 827


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 52  MEFVVAETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 165
           ME +        IPGE   ++++EGVL     + S+VK
Sbjct: 434 MELLDCRVTMGKIPGEDFSYSDHEGVLATFSIKTSVVK 471


>SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 155 DGRSTEHNSTPSFSVNKMGSPGMLVSLVSATTNSIXXXKXVTS 27
           D   T + +TP+  V  M + G ++S+ S +++ I     +TS
Sbjct: 319 DLECTNNPNTPTIHVRPMSAAGEVISIYSRSSSPIRSQSVITS 361


>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 265 NTTRSDDYESNKQPDYDMDLSDFS 336
           N   +DDY    QPDYD  L D +
Sbjct: 704 NNGLNDDYLPGVQPDYDQALEDIT 727


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,770
Number of Sequences: 59808
Number of extensions: 196035
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)