Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m19
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 27 5.5
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 27 5.5
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 27 5.5
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 5.5
Z77670-3|CAE17973.1| 201|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 26 9.5
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 26 9.5
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 EALVNFENDNC-NVRIAKTFGASKRKNTTRSDDYESN 297
EA+ N ++DN + + KTFG + +++ SD+ SN
Sbjct: 39 EAVKNLKDDNVLSKALVKTFGLNSSSSSSLSDESSSN 75
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 64 VAETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 165
+ + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 280 DDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVE 387
+D ++ QP MD+SD S+ +VE+ +LT L E
Sbjct: 3 EDEKAGLQP---MDISDASVADVESKDFLTSLFDCE 35
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 280 DDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVE 387
+D ++ QP MD+SD S+ +VE+ +LT L E
Sbjct: 3 EDEKAGLQP---MDISDASVADVESKDFLTSLFDCE 35
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 92 PENPFCLXKTRGCCCAPSTD 151
PEN FC T G CC P D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 64 VAETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 165
+ + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>Z77670-3|CAE17973.1| 201|Caenorhabditis elegans Hypothetical
protein W05E10.5 protein.
Length = 201
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 202 NFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPD--YDMD 321
N +ND +V+ +K+F AS N T + Y D YD++
Sbjct: 98 NNKNDCKSVKTSKSFNASSMANHTMTKQYTEQNHNDQYYDVE 139
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 88 IPGEPILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNFENDNCNVRIA-KTFGASKRK 264
I +PI G++LC ++ + +M + EF T + F D R+ K F A K
Sbjct: 295 IDEQPIYTRYKVGIMLCKNEQSTEEQMYNNEFSTPSFDEF-LDFLGQRVTLKGFEAYKGG 353
Query: 265 NTTRSD 282
TR D
Sbjct: 354 LDTRGD 359
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 88 IPGEPILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNFENDNCNVRIA-KTFGASKRK 264
I +PI G++LC ++ + +M + EF T + F D R+ K F A K
Sbjct: 295 IDEQPIYTRYKVGIMLCKNEQSTEEQMYNNEFSTPSFDEF-LDFLGQRVTLKGFEAYKGG 353
Query: 265 NTTRSD 282
TR D
Sbjct: 354 LDTRGD 359
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 143 TEHNSTPSFSVNKMGSPGML 84
T H STPS ++ SPGM+
Sbjct: 147 TPHGSTPSTGTPRLSSPGMV 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,250,047
Number of Sequences: 27780
Number of extensions: 141450
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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