Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m17
(194 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 120 5e-27
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 96 1e-19
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 91 6e-18
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 91 6e-18
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 84 5e-16
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 84 7e-16
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 83 2e-15
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 75 4e-13
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 71 4e-12
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 70 1e-11
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 66 1e-10
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 66 2e-10
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 64 4e-10
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 64 6e-10
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 64 6e-10
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 63 1e-09
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 62 2e-09
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 58 3e-08
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 58 4e-08
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 54 5e-07
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 54 5e-07
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 54 6e-07
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 52 2e-06
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 52 2e-06
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 52 3e-06
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 50 8e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 50 1e-05
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 46 2e-04
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 45 4e-04
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 43 0.002
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 41 0.006
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 37 0.075
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 37 0.099
UniRef50_A5BBR4 Cluster: Putative uncharacterized protein; n=1; ... 31 3.7
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 30 8.6
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 120 bits (290), Expect = 5e-27
Identities = 58/64 (90%), Positives = 59/64 (92%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV TA RHVLLR GVLGIKVK
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 181 IMLP 192
IMLP
Sbjct: 188 IMLP 191
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 96.3 bits (229), Expect = 1e-19
Identities = 44/63 (69%), Positives = 52/63 (82%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH LLR G +G++VK
Sbjct: 43 ESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRHALLRQGTIGMRVK 102
Query: 181 IML 189
IML
Sbjct: 103 IML 105
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 90.6 bits (215), Expect = 6e-18
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
+ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY+ A RHV + G++G+KVK
Sbjct: 141 QDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVK 200
Query: 181 IMLP 192
IMLP
Sbjct: 201 IMLP 204
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 90.6 bits (215), Expect = 6e-18
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA+G EVV+SGKLR RAKS K+ DG MIHSG P D++ A RHVL+R GVLGIKVKI
Sbjct: 130 AGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGIKVKI 189
Query: 184 M 186
M
Sbjct: 190 M 190
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 84.2 bits (199), Expect = 5e-16
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA+GCEV + GK++GQRAKSM F DG MI SG +V TATRH LR G +G+ VK
Sbjct: 179 ESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGVNVK 238
Query: 181 IMLP 192
IM P
Sbjct: 239 IMRP 242
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 83.8 bits (198), Expect = 7e-16
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = +1
Query: 10 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKIML 189
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+ T V + GV+GI+V+IML
Sbjct: 142 AQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIML 201
Query: 190 P 192
P
Sbjct: 202 P 202
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 82.6 bits (195), Expect = 2e-15
Identities = 41/64 (64%), Positives = 46/64 (71%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV T+ HVLLR GVLG K +
Sbjct: 82 ESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSKCR 141
Query: 181 IMLP 192
P
Sbjct: 142 SCFP 145
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 74.5 bits (175), Expect = 4e-13
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +R GV+G+KV+I
Sbjct: 135 AGAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRI 194
Query: 184 MLP 192
P
Sbjct: 195 YNP 197
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 71.3 bits (167), Expect = 4e-12
Identities = 33/46 (71%), Positives = 37/46 (80%)
Frame = +1
Query: 52 QRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKIML 189
QRAKSMKF DG M+ SG P +Y+ +A RHVLLR GVLGIKVKIML
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIML 47
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 69.7 bits (163), Expect = 1e-11
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++ +GI+V
Sbjct: 129 DAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVL 188
Query: 181 IML 189
IML
Sbjct: 189 IML 191
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 66.5 bits (155), Expect = 1e-10
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GARG E+V+SGKL QR ++ KF G + SG+P + V A HVLL+ G+ G+KV+I
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183
Query: 184 MLP 192
M P
Sbjct: 184 MKP 186
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 65.7 bits (153), Expect = 2e-10
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180
Query: 181 IMLP 192
I+ P
Sbjct: 181 IIPP 184
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
SGA+G ++VSGKL G+R+++ KF+DG M H G+P V + + L+ G++G+ VKI
Sbjct: 122 SGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKI 181
Query: 184 MLP 192
M P
Sbjct: 182 MRP 184
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 64.1 bits (149), Expect = 6e-10
Identities = 33/48 (68%), Positives = 35/48 (72%)
Frame = +1
Query: 43 LRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKIM 186
L QRAKSMKF DG +I SG P DY+ A RHV LR GVLGIKVKIM
Sbjct: 116 LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGIKVKIM 162
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 64.1 bits (149), Expect = 6e-10
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V + + G LG KV+I
Sbjct: 123 AGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRI 182
Query: 184 MLP 192
+ P
Sbjct: 183 IQP 185
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VK
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181
Query: 181 IMLP 192
I+ P
Sbjct: 182 IVPP 185
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 62.1 bits (144), Expect = 2e-09
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GARG E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV I
Sbjct: 123 NGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
Query: 184 MLP 192
M P
Sbjct: 183 MPP 185
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 58.4 bits (135), Expect = 3e-08
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+I
Sbjct: 122 AGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRI 181
Query: 184 MLP 192
M P
Sbjct: 182 MPP 184
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 58.0 bits (134), Expect = 4e-08
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA G E+V+SGK+ G R++ KF G + H+G+P + V + +++ G +G++VK
Sbjct: 122 ESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVK 181
Query: 181 IMLP 192
I+ P
Sbjct: 182 IIPP 185
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 54.4 bits (125), Expect = 5e-07
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
SG RGC + + G R +R K+ KF GL+ HSG ND++ + + ++ + G LGI +KI
Sbjct: 171 SGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKI 230
Query: 184 M 186
M
Sbjct: 231 M 231
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/63 (34%), Positives = 42/63 (66%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + + G +G+ V+I
Sbjct: 131 AGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRI 190
Query: 184 MLP 192
M P
Sbjct: 191 MPP 193
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 54.0 bits (124), Expect = 6e-07
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ VK
Sbjct: 121 QAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVK 180
Query: 181 IMLP 192
I+ P
Sbjct: 181 ILNP 184
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 52.4 bits (120), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
E+GA G E+++SGKLR +RA+ K G + +GD + V A LL+ GV G++V
Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVV 184
Query: 181 IMLP 192
I+ P
Sbjct: 185 IVRP 188
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA G +V VSGKLRG+RA+ K++ G + SG+ A HVLL+ GV G++V I
Sbjct: 128 AGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 51.6 bits (118), Expect = 3e-06
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
E+GA+G E+VVSGKL +RA+ K G + G + V A HVLL+ G+ GI+V+
Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
Query: 181 I 183
I
Sbjct: 192 I 192
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 50.4 bits (115), Expect = 8e-06
Identities = 21/64 (32%), Positives = 40/64 (62%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
E+ +G EV++SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V+
Sbjct: 120 EANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVR 179
Query: 181 IMLP 192
++ P
Sbjct: 180 VLPP 183
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 49.6 bits (113), Expect = 1e-05
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
SGA G EV+VSGKL +RAK K +G + SG + A +L+ GV G++V I
Sbjct: 124 SGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183
Query: 184 MLP 192
P
Sbjct: 184 TKP 186
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 61 KSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKIML 189
K + + +I SG P DY+ + RHVLL+ GVL IKVKI++
Sbjct: 186 KGCEVIGWYIISSGQPVKDYINSVVRHVLLKQGVLSIKVKIIV 228
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 44.8 bits (101), Expect = 4e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
++GARGC +++SGK+ G R + KF G + G+ ++ + + G +G V+
Sbjct: 126 DAGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVR 185
Query: 181 IMLP 192
IM P
Sbjct: 186 IMRP 189
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 42.7 bits (96), Expect = 0.002
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +1
Query: 4 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
+GA G E+V++G+L GQR K+ +F G + +G + A L+ GV GI V I
Sbjct: 123 AGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTI 182
Query: 184 MLP 192
+ P
Sbjct: 183 LKP 185
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 40.7 bits (91), Expect = 0.006
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 10 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
A G ++ +SGKLRG R+ K G++ +G + V HV G++GI+++I
Sbjct: 126 AMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 37.1 bits (82), Expect = 0.075
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVXTATRHVLLRXGVLGIK 174
ESGARG +V++SG+L G ++A++ K ++G + +H+ DY R G+LGIK
Sbjct: 144 ESGARGVKVILSGRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIK 200
Query: 175 VKI 183
V +
Sbjct: 201 VLV 203
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 36.7 bits (81), Expect = 0.099
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = -3
Query: 186 HDFDLDS*YSXPEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGT 7
H+ D D+ + +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
>UniRef50_A5BBR4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 246
Score = 31.5 bits (68), Expect = 3.7
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 164 STPXLRS-TCLVAVXT*SLQGSPEWIMSPSTNFIDLAR*PRSLPDTTTSQPRAP 6
S+P LR T +V T S+ SP+ + + +T D + PRSL + S PR+P
Sbjct: 170 SSPSLRCRTTVVXAQTPSIDESPK-LQAKTTTPTDTVKTPRSLLSSNPSSPRSP 222
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 30.3 bits (65), Expect = 8.6
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1
Query: 10 ARGCEVVVSGKLRGQRAKSMK 72
ARGC V++GKL+G++A S K
Sbjct: 235 ARGCYKVITGKLKGRKADSKK 255
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,946,436
Number of Sequences: 1657284
Number of extensions: 3028907
Number of successful extensions: 6589
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 6467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6585
length of database: 575,637,011
effective HSP length: 44
effective length of database: 502,716,515
effective search space used: 10054330300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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