Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m17
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   107   3e-25
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   1.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   2.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   3.2  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    23   4.2  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    23   5.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    23   5.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    23   5.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   5.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    22   9.7  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    22   9.7  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    22   9.7  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    22   9.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  107 bits (256), Expect = 3e-25
 Identities = 48/64 (75%), Positives = 55/64 (85%)
 Frame = +1

Query: 1   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
           E+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++ +ATRHVLLR GVLG+KVK
Sbjct: 130 EAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVK 189

Query: 181 IMLP 192
           IMLP
Sbjct: 190 IMLP 193


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 49  GQRAKSMKFVDGLMIHSGDPCNDYV 123
           G+R K + F D    H G P  DY+
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYI 242


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 106 PCNDYVXTATRHVL 147
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 28   VVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRH 141
            ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1882 LLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 144 HMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTT 16
           HMS SS      ++ ++  E + KL+ FG L  Q   ++ FT+
Sbjct: 127 HMSWSSKSE--GKMFKIPEELLNKLNGFGALEKQKKSFSFFTS 167


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 82  HLQTSLIWHVDHAA 41
           H QT+ +W V+HAA
Sbjct: 465 HDQTARLWDVEHAA 478


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 15  WL*SCCIWQAAWSTC 59
           W   CCI +  W TC
Sbjct: 303 WKLVCCICKLRWGTC 317


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  WSTCQINEVCRWTHDPLW 101
           WST +   + RW  +PL+
Sbjct: 318 WSTSRDGSILRWKDEPLF 335


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -3

Query: 174  LDS*YSXPEKHMSGSSVDVIIARVSRVDH 88
            L+  ++ P+K +  S ++VI+  VSR+++
Sbjct: 1390 LNEFFAEPDKRLLNSHLEVIVNIVSRLNY 1418


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 36  RYNNFTTTGTRF 1
           RY NFTTT + F
Sbjct: 671 RYKNFTTTSSSF 682


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 63  INEVCRWTHDPLWR 104
           + EVC +  D LWR
Sbjct: 84  VGEVCDYAEDNLWR 97


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 115 DYVXTATRHVLLRXGVLGIK 174
           D +   +RHVLLR G  G +
Sbjct: 132 DILIRESRHVLLREGTTGAR 151


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   ESGARGCEVVVSGKLRGQRAKSMK 72
           ++GAR  E V  GK+RG  AK +K
Sbjct: 309 DAGARPDEAVSWGKIRGD-AKKVK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,973
Number of Sequences: 5004
Number of extensions: 12329
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)