Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m17
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   101   1e-22
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     27   1.6  
08_02_0478 + 17621678-17623768                                         27   2.1  
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579     26   3.7  
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622...    26   4.9  
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    26   4.9  
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407...    25   8.5  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  101 bits (241), Expect = 1e-22
 Identities = 49/63 (77%), Positives = 53/63 (84%)
 Frame = +1

Query: 1   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
           ESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+ +A RHVLLR GVLGIKVK
Sbjct: 130 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVK 189

Query: 181 IML 189
           IML
Sbjct: 190 IML 192


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 103 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 8
           +QSG+       LIWH+  + C+I+    H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 70  KFVDGLMIHSGDPCNDYVXTATRHVLLRXGVL 165
           K + GL+IHSG   ND+V ++   +  + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452


>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
          Length = 824

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = -2

Query: 115 HCKGLQSGS*VHL-QTSLIWHVDHA-----ACQIQQLHNH 14
           H      GS + + +TSL+WH + A     +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696


>03_02_0183 -
           6225827-6226414,6226478-6226512,6227244-6227331,
           6228892-6228900
          Length = 239

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 51  STCQINEVCRWTHDPLWRPLQ 113
           ST  +   CRW H P + P Q
Sbjct: 122 STSHVGASCRWPHPPPYMPRQ 142


>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 3   IWCPWL*SCCIWQAAWSTCQINEVCRWT 86
           +WC WL  C   +   +  ++   CR T
Sbjct: 806 VWCKWLEECASGRVPCNDLKLKSYCRLT 833


>08_02_0921 -
           22640125-22640268,22640349-22640423,22640496-22640757,
           22642286-22642578,22642609-22642812,22643216-22643901,
           22643958-22644033
          Length = 579

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 191 GNMILTLIPSTPXLRSTCLVAVXT*SLQGSPEWIM 87
           GNM+  LI ++P L    LV+V         EW++
Sbjct: 163 GNMLAALISASPLLEEVELVSVFLVGDYPDEEWVI 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,453,684
Number of Sequences: 37544
Number of extensions: 88254
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)