Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m17
         (194 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       113   2e-26
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   0.59 
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   0.59 
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     27   2.4  
SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         25   7.3  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  113 bits (273), Expect = 2e-26
 Identities = 53/64 (82%), Positives = 57/64 (89%)
 Frame = +1

Query: 1   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV TA RHV LR GVLGIKVK
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKVK 187

Query: 181 IMLP 192
           IMLP
Sbjct: 188 IMLP 191


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  WQAAWSTCQINEVCRWTHDPLW 101
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 30  CIWQAAWSTCQINEVCRWTHDPLWRP 107
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 49  GQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
           G++      ++   IH G P  DY     +  L R GV G+ V I
Sbjct: 25  GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69


>SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 30 CIWQAAWSTCQINEVCRWTH 89
          C++ A WS C INE+ R  H
Sbjct: 10 CVF-ACWSNCLINEINRTNH 28


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 91   IHSGDPCNDYVXTATRHVLLRXG 159
            IH   P NDYV +   HV  R G
Sbjct: 3000 IHHEKPANDYVQSRNDHVQSRFG 3022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,355,196
Number of Sequences: 59808
Number of extensions: 108933
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 43
effective length of database: 14,249,713
effective search space used: 299243973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)