Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m17
(194 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 109 3e-25
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 1.8
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 1.8
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 27 2.4
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 27 2.4
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 27 2.4
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 27 2.4
AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical ... 26 4.3
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical... 25 7.4
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical... 25 7.4
AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical ... 25 7.4
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 25 9.8
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 109 bits (262), Expect = 3e-25
Identities = 51/64 (79%), Positives = 56/64 (87%)
Frame = +1
Query: 1 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVK 180
ESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR GV+GIKVK
Sbjct: 130 ESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVK 189
Query: 181 IMLP 192
IMLP
Sbjct: 190 IMLP 193
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 129 CYQTCASQARSTRNQGQNHVA 191
CY CAS ST Q QNH A
Sbjct: 1801 CYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 129 CYQTCASQARSTRNQGQNHVA 191
CY CAS ST Q QNH A
Sbjct: 1801 CYGDCASITISTTIQNQNHTA 1821
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 82 GLMIHSGDPCNDY 120
GL++H G PCN+Y
Sbjct: 691 GLILHPGSPCNNY 703
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 43 LRGQRAKSMKFVDGLMIHSG 102
LRG R K+ FV+G+++++G
Sbjct: 272 LRGSRIKNTTFVEGIVVYAG 291
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 43 LRGQRAKSMKFVDGLMIHSG 102
LRG R K+ FV+G+++++G
Sbjct: 272 LRGSRIKNTTFVEGIVVYAG 291
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 82 GLMIHSGDPCNDY 120
GL++H G PCN+Y
Sbjct: 691 GLILHPGSPCNNY 703
>AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical
protein F31F4.11 protein.
Length = 283
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 45 AWSTCQINEVCRWTH 89
AW+TC + C WTH
Sbjct: 17 AWATCVVIIFCCWTH 31
>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
protein Y105E8A.23b protein.
Length = 1156
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 30 CIWQAAWSTCQINEVCR 80
C W A S Q+NE+CR
Sbjct: 1074 CFWTHANSVDQMNEICR 1090
>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
protein Y105E8A.23a protein.
Length = 1138
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 30 CIWQAAWSTCQINEVCR 80
C W A S Q+NE+CR
Sbjct: 1056 CFWTHANSVDQMNEICR 1072
>AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical
protein C17B7.10 protein.
Length = 561
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 67 MKFVDGLMIHSGDPCNDYVXTATRHVLLRXGVLGIKVKI 183
++ +DGLM DP ++ + L+R GV + + I
Sbjct: 74 LQIIDGLMFQLPDPSDETFSKCSEFKLIRTGVAELFLSI 112
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 101 PEWIMSPSTNFIDLAR*PRSLPDTTTSQPRAP 6
P I+ P+T+ L+ +LPD TT P P
Sbjct: 546 PVVIVDPATSEEPLSTASTALPDETTDAPEEP 577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,538,235
Number of Sequences: 27780
Number of extensions: 73513
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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