Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m17
         (194 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   2.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   4.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     18   9.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 79   DGLMIHSGDPCND 117
            D L+ H G P ND
Sbjct: 995  DVLVFHQGQPTND 1007


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  NEVCRWTHDPLWRPL 110
           N++ +W  D  W+P+
Sbjct: 98  NKLQQWNEDLNWQPI 112


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  NEVCRWTHDPLWRPL 110
           N++ +W  D  W+P+
Sbjct: 113 NKLQQWNEDLNWQPI 127


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = +3

Query: 27  CCIWQAAWS 53
           CC W+  W+
Sbjct: 488 CCWWKICWT 496


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = +3

Query: 27  CCIWQAAWS 53
           CC W+  W+
Sbjct: 541 CCWWKICWT 549


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 85  LMIHSGDPCNDYVXTA 132
           L+IH GDP    V TA
Sbjct: 158 LIIHPGDPRIKSVVTA 173


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 167 PSTPXLRSTCLVAVXT*SLQGS 102
           PSTP + ++C +       QGS
Sbjct: 132 PSTPIVYASCKLQAAAVDHQGS 153


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 95  TLETLAMITSTLLPDMCFSG 154
           TLE L   T  LLP +   G
Sbjct: 212 TLEELGFDTEGLLPPVWVGG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,286
Number of Sequences: 438
Number of extensions: 782
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)