Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m11
(314 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.20
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 0.60
SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1) 29 1.0
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08) 28 1.4
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 1.8
SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2) 28 1.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 4.2
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0) 27 4.2
SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22) 26 5.6
SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6) 26 5.6
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 26 7.4
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 26 7.4
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 25 9.8
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 25 9.8
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 25 9.8
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 25 9.8
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 25 9.8
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQ 149
K Y + +TC +Y ++ + I LRRF+CRR +SYQ
Sbjct: 724 KRYGVLFTCMASRAIYLEVAHSLETDWYINALRRFICRRGPVREMRSYQ 772
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL 136
VIKK + + V + F++N K + + D+ + KEN ++ Y+L
Sbjct: 378 VIKKAVRRQLHVLDETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVL 432
>SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)
Length = 88
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 262 FPNVYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLR 125
F VY+ P A ++ P++++ C TC Q Q+ L++
Sbjct: 26 FGTVYKATWAGTPVAVKVIPIKKYTCAPQTCRTAQEEQATLVALIK 71
>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
Length = 326
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -2
Query: 253 VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTS 74
+YR + RPN + P RR TC +K+ +L +++L +T SL +
Sbjct: 142 LYRSSFE-RPNGSKRLPYRRCFVNFMTCNQKRKTVTLAISSQWRKSLKKTKSPRYQSLKT 200
Query: 73 LYF 65
F
Sbjct: 201 TMF 203
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 58 VQENIMTSNCASSPYSCEATSAC 126
+QE+I+ CA ++CE T+ C
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKC 914
>SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)
Length = 87
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 113 QRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRPRLQ 238
+R + Q +R T S TC+PPT CN C +Q
Sbjct: 7 KREIEQANARPLACTAESQTCSPPTKSIGSECNTECAEADVQ 48
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 82 NCASSPYSCEATSAC 126
NC S YSC +TS C
Sbjct: 2413 NCTQSEYSCRSTSRC 2427
>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1627
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 170 TCTPPTYKSTQRCNAACVRP 229
TC PP+ T CNA CV P
Sbjct: 345 TCVPPSV--TPECNATCVGP 362
>SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 109 EATSACAEAQQVMIDNFVFFHMYTADIQID 198
E S CAE Q ++DN + H++ ++ ++
Sbjct: 352 EIDSMCAELSQWLLDNNIVEHLFGPNLHVE 381
>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
Length = 1043
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQ 149
K Y + +TC V+ ++ I LRRF+CRR + +S Q
Sbjct: 747 KRYGVLFTCLASRAVHIEIAHNLETDSYINALRRFICRRGPIRQMRSDQ 795
>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
Length = 501
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 22 RNMIRTSSHVLNVQENIMTSNCASSPYSCEATSA 123
R++++TS H L N + C SS +S ++ ++
Sbjct: 321 RSVVKTSKHELTEDGNFVRYTCPSSTWSSDSENS 354
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 16 EQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSA 123
+Q+N +R SH N + +I S SSP+ + +A
Sbjct: 1436 QQQNKMRPQSHQRNSRNSINLSKLRSSPHQKDPKNA 1471
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 58 VQENIMTSNCASSPYSCEATSAC 126
+QE+ + CA ++CE T+ C
Sbjct: 79 LQESTVKGGCAEGQFACEKTNKC 101
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 292 KIYSLFYTCTFPNVYRQLLQTR 227
+IYS F C FP VY+++LQ +
Sbjct: 2318 EIYS-FLCCFFPKVYKRVLQNQ 2338
>SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 312 FFFIVIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKV 154
F I+ + +L ILV + I + G ++ C+ LY+ GV V+E +
Sbjct: 128 FIRIMTRSHVLTKILVSEALSIFTWYFVGFSYDYTSGCLKLYLNGVLVREYNI 180
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRR 179
K Y + +TC ++ ++ + I LRRF+CRR
Sbjct: 1359 KRYGVLFTCMASRAIHLEVAHSLETDSYINALRRFICRR 1397
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 287 LFSILYLYISKCLSSIIANAAERTPHC 207
+ + L+ Y CL S++ ++ ERT C
Sbjct: 29 VLACLHTYCRHCLESLVEHSQERTVSC 55
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 287 LFSILYLYISKCLSSIIANAAERTPHC 207
+ + L+ Y CL S++ ++ ERT C
Sbjct: 29 VLACLHTYCRHCLESLVEHSQERTVSC 55
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -2
Query: 190 VCRRCTCERKQSYQSLPAELLRKRTLP----RTNMAMTHSLT--SLYFPGRSARDCW 38
VC+RC +++ ++L LL+ +T +T + +THS + +L + R + W
Sbjct: 128 VCKRCFSSKEKCRKNLALVLLKSQTEQMSHVKTPLGITHSRSTRALQYLSRDMSNVW 184
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 VIDNEQRNMIRTSSHVLNVQENIMTSNCASS-PYSCEATSACAEAQQVMIDN 156
VI+N+Q + +H ++ +TSN + P C++ S+ + +IDN
Sbjct: 534 VINNKQTIQKQELNHGPEDDDSNITSNGLGTWPLGCDSESSSTKENNALIDN 585
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,988
Number of Sequences: 59808
Number of extensions: 200824
Number of successful extensions: 577
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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