Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8m09
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    32   0.46 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   3.3  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   3.3  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    28   10.0 

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 186 VCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMV 52
           VC I    + INY    G  +     I+NV ICV ++L+    MV
Sbjct: 208 VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVSPMV 252


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 570  RFTSRILRVKHDQEMMSFIIKIKIDVIC 487
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 469  RFTSRILRVKHDQEMTSFVFQN*T 398
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 570  RFTSRILRVKHDQEMMSFIIKIKIDVIC 487
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 469  RFTSRILRVKHDQEMTSFVFQN*T 398
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -2

Query: 648 HDRKVMSFVFQNLI*EMMSLVFQN*TRFTSRILRVKHDQEMMSFII-----KIKIDVICF 484
           H +KV  F  + LI E++SLV +     + RI  +  D+E  S ++       K+DV   
Sbjct: 158 HGQKVNEFSHKQLIEELVSLVDEGTELGSGRIRLIARDREARSGVVILETQSTKVDVKLV 217

Query: 483 FKTELAL 463
             T L L
Sbjct: 218 HNTGLKL 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,394
Number of Sequences: 27780
Number of extensions: 295373
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)