Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8m03
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31) 32 0.44
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5) 29 4.1
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 4.1
SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05) 29 5.4
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 28 9.4
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 505 HHMGHHALSQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQR 684
HH + S +RR+G + Q+ +R + + E +I + H T +P + ++R
Sbjct: 16 HHAARNG-EDSSYRRHGTVSLQEMTRRVKSETKGMEWSIQKYTLHNTTDAIPSPVNHKRR 74
Query: 685 FP 690
FP
Sbjct: 75 FP 76
>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
Length = 836
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Frame = +1
Query: 472 VPAQEFYLHVYHHMGHHALSQSHHRRYGVYARQKQSRFCHAAVENDEGAI---------- 621
V A F +H+ H HH SQ ++ +RF +++GA+
Sbjct: 256 VLASHFNVHLVHGRPHHPQSQGQVENLNKQVKRYLARFLQPLPRDEQGAVWPLLLSGVAD 315
Query: 622 -LQRIFHTTVRHVPRSLYERQRFPHL 696
L + +H+T+ P +Y+ + HL
Sbjct: 316 LLNKSWHSTINDTPFRVYKNREPSHL 341
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -2
Query: 483 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 319
LGWH RK + S S AH CC+ F S F+KH W+
Sbjct: 75 LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 409 HGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRY 552
H L HR Y +H Q + H +HH HH Q HH +
Sbjct: 248 HKLKNPRHR-YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHH 294
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +2
Query: 266 ASKSAHLTKLLSSQAT---YLYHFACLMKYKDIQKYEVQQLI 382
++KS + KLL ++ + YLYHF +K K+ +++E +Q+I
Sbjct: 306 SAKSGYNVKLLFTKLSKDLYLYHFTRYLKMKEERRHEGEQII 347
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 409 HGLATVSHRIYGQNHRTQ-FAFVPAQEFYLHVYHHMGHHALSQSHHRRYGVYARQKQSRF 585
H L +VSH +G H + V L V H + +H+L H R+GV S
Sbjct: 221 HSLFSVSHIRFGITHPSPCHTLVSVSLTLLGVTHSIRYHSLFSVSHTRFGV----THSSR 276
Query: 586 CHAAV 600
CH V
Sbjct: 277 CHTLV 281
>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
Length = 55
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 414 TCNS--FA*NLWTKPQNSICVRASP 482
TC F ++W+ PQN+ICVR P
Sbjct: 17 TCKKGLFKMSVWSNPQNNICVRECP 41
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 430 HRIYGQNHRTQFAFVPAQEF-YLHVYHHMGHHALSQSHHRRY 552
H + NH +AF F Y HH H+A + +H Y
Sbjct: 26 HYAFTSNHTFHYAFTSNHTFHYTFTSHHTFHYAFTSNHTFHY 67
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = +1
Query: 430 HRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRYGV 558
H++ HR + H +HH HH Q HH + +
Sbjct: 36 HKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHHHHI 78
>SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)
Length = 508
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +1
Query: 472 VPAQEFYLHVYHHMGHHALSQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFH 639
V A F +H+ H +H SQ ++ +RF +++G + +FH
Sbjct: 335 VLASHFNVHLVHGRPYHPQSQGQVENLNKQVKRYLARFLQTLPRDEQGKTEKEVFH 390
>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 589 HAAVENDEGAILQRIFHTTVRH 654
HA ++ D+G I + F TTVRH
Sbjct: 326 HAKIKRDKGLISNKEFKTTVRH 347
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 502 YHHMGHHALSQSHHRRYGVYARQKQSRFCHA-AVENDEGAILQRIFHT 642
+HH HH Q HH + +Q+Q H + + G I+ I T
Sbjct: 237 HHHKQHHHQQQRHHHHEQHHHQQQQHHHHHEHIIITNNGIIMNNIIIT 284
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 377 LIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMV 556
L E A N + L RI+ + + NL S + Y F++IW+ +I
Sbjct: 774 LDEEAANRGTTVYLTDQRIDMVPELLSSNLCSLRSNVDRYAFSSIWEMTPDADVISTKFT 833
Query: 557 YT--RDKSSLDFVMQQLK 604
+ R K+SL + QL+
Sbjct: 834 KSIIRSKASLTYAEAQLR 851
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 126 YVSADTDADEPIIYFENITECLTDDQCDKFTYFA 25
YV+ D D I YF N E + DQ KF FA
Sbjct: 3294 YVAGIKDTDLHIEYFWNALENFSQDQLRKFIKFA 3327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,313,789
Number of Sequences: 59808
Number of extensions: 521666
Number of successful extensions: 1608
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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