Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l24
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             206   1e-53
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   34   0.12 
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)                   29   3.3  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)                 28   5.7  
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              28   5.7  
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)                      28   7.6  
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)                      28   7.6  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  206 bits (503), Expect = 1e-53
 Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
 Frame = +1

Query: 52  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
            +Y+TKVRAGRGFTL E++AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123

Query: 412 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 588
           LI+FP K  K  +G++   +   A QL+GP+MP+ Q +    ARPITEDEK   + +   
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCE 183

Query: 589 GARSI-AKLVGI 621
            +  +  KLVG+
Sbjct: 184 SSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 328 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 486
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
          Length = 665

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 337 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 516
           +P  + ++ E+ + N ++ +E  A  +   K KKVL     E+     ++LR        
Sbjct: 462 EPAWKREAREAREANYKKPEEKVAPSVQHLKDKKVLPVLRPEDILSGKSELRKSWREPDV 521

Query: 517 PAPKSVARPITEDE 558
           PAPK    P  EDE
Sbjct: 522 PAPKKPVPPPPEDE 535


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 177 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRK 13
           G  F  +IL+ A  SS L++P F+ SLP+  +      +  L H      P +RK
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERK 248


>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
          Length = 430

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
           +GS     V ++T  NP  L++R  N +P R  +L+W++  G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 313 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 483
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
          Length = 449

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226


>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
          Length = 318

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 66  KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,719,537
Number of Sequences: 59808
Number of extensions: 393186
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)