Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8l12
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 45 1e-05
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 44 2e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 43 5e-05
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 43 5e-05
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 40 4e-04
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 33 0.054
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 31 0.16
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 29 0.50
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 29 0.66
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 28 1.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 27 2.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.5
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 6.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 6.2
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 26 6.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 6.2
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.2
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 8.2
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 598 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGING 702
+ E P YIK GE+RD+Q+ G+NWM L+ NG
Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENG 411
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
P + G++++YQ+RGL WMISLY N +NG
Sbjct: 409 PSILVGGKLKEYQLRGLQWMISLYNNHLNG 438
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 42.7 bits (96), Expect = 5e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
P G ++DYQ++GL WM+SLY N +NG
Sbjct: 861 PKIFVGGTLKDYQLKGLEWMLSLYNNNLNG 890
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 574 NSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGING 702
NS+ K + E P YI GE+RD+Q+ G+NWM L+ NG
Sbjct: 355 NSRPK-YRKLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENG 396
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 39.9 bits (89), Expect = 4e-04
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = +1
Query: 634 EMRDYQVRGLNWMISLYENGING 702
++++YQ++GLNW+ +LYE GING
Sbjct: 841 KLKEYQLKGLNWLANLYEQGING 863
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 367 RSKRFDFLLKQTEIFSHFM-TNTPKSGGSPPKAKAGRPRKIKIDTEPE 507
++++ DFL+ QTE++SHF+ + P +I D++ E
Sbjct: 727 QARKLDFLITQTELYSHFVGRKMDREQDLPSATNTASVSEINFDSDEE 774
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 32.7 bits (71), Expect = 0.054
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 589 TIFRFEASPHYIKNGEMRDYQVRGLNWM 672
T + + P +IK G + YQ++GLNW+
Sbjct: 540 TNLEWHSQPSFIKGGTLMPYQLKGLNWL 567
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 31.1 bits (67), Expect = 0.16
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 619 YIKNGEMRDYQVRGLNWMISLYENGING 702
++ G +R+YQ GL W+ +L+++ NG
Sbjct: 441 FLFRGTLREYQQYGLEWLTALHDSNTNG 468
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 634 EMRDYQVRGLNWMISLYENGING 702
+++DYQ+ G+NW+ LYE + G
Sbjct: 386 KLQDYQIIGINWLYLLYELKLAG 408
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 500 NLKVLEITDIEKLSKKKMKNFWQKQIQNKRQYLDLKHLHI 619
N+K+ + T IE SKKK Q Q++ + ++L+ K HI
Sbjct: 275 NVKLCQKTSIET-SKKKDSELSQSQLRKREKHLEQKIFHI 313
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 613 PHYIKNG-EMRDYQVRGLNWMISLYENGING 702
P I +G ++ YQ+ GLNW+ +Y+ ++G
Sbjct: 405 PSSIASGITLKSYQIVGLNWLCLMYKAKLSG 435
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 449 VLQKQRLA-DPER*K*TLNLK--VLEITDIEKLSKKKMKNFWQKQIQNKR 589
+LQK ++ DP+ K + LK ++ + IE++ K+MKN W KQ Q K+
Sbjct: 1147 MLQKIGISPDPDLSKKHIKLKSLIIVVCSIERM--KRMKNEWLKQAQLKQ 1194
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 383 SNLLERSVSILLSKSPSFPLEDVVSLEEPLELSPISATSMASS 255
SN ++ S I L++SPS P+E +S ++L I S SS
Sbjct: 6 SNGIDESSVIDLTRSPSPPVETSISSTNIIDLDAIPDDSFPSS 48
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 634 EMRDYQVRGLNWMISLYENGING 702
+++ YQ+ G+NW+ LY+ ++G
Sbjct: 549 QLKSYQLVGVNWLHLLYQQKLSG 571
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 293 PMALQVTRHLQEGKKVISRVRLKL 364
P ++ V R E KK++SR+R KL
Sbjct: 130 PESIDVARFSSEEKKILSRIRRKL 153
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 397 ALVENRISWNDQFQSYSRNHLLSLL 323
A + + IS ND+ +S+S N LLS+L
Sbjct: 171 ASMGDAISTNDELESWSNNLLLSML 195
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -3
Query: 413 ENISV--CFSRKSNLLERSVSILLSKSPSFPLEDVV-SLEEPLELSPISATSMASS 255
ENIS + ++ + +++++ P P+ + +L EP+ LSP S+T +S
Sbjct: 189 ENISANAIHVNQDKVIRSANNLIINSQPILPVRSFLDALGEPIYLSPTSSTYFLNS 244
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.2
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = -3
Query: 485 IFLGLPAFAFGGLPPDFGVLVIK*E-NISVCFSRKS-NLLE-RSVS-ILLSKSPSFPLED 318
+ GLP + GGL D GVL ++ E + + + S ++E R+++ +LL K +F E
Sbjct: 292 LLTGLPEYRNGGLFVDLGVLTLRPEFSYATEYEPSSVTIVEWRAMTVVLLDKLLAFVNER 351
Query: 317 V-VSLEEPLELS 285
+ L EPL L+
Sbjct: 352 LKPELSEPLSLA 363
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 367 RSKRFDFLLKQTEIFSHFMTN 429
R K+F+ L +++E FSH M N
Sbjct: 164 RQKKFNLLREESEGFSHLMIN 184
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 384 FSTKANGDIFSFYDQHSKI--WWESSKSKGWQTQKD 485
FST+ + D +++ + + W E+S + WQ +KD
Sbjct: 1170 FSTQGHKDKDNYFQNYQLLLNWLENSDPRVWQIKKD 1205
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 454 PKAKAGRPRKIKIDTEPEGPGDHRHR 531
PK A P + +DT P H H+
Sbjct: 30 PKPSANNPNLLSVDTRPTHRKGHHHK 55
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 143 NNLKL*IDCMKDFVVQCI 90
+N+KL +D +D++V CI
Sbjct: 557 SNMKLIVDTFRDYIVDCI 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,153
Number of Sequences: 5004
Number of extensions: 62151
Number of successful extensions: 225
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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