Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8l12
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 60 1e-09
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 60 2e-09
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 47 2e-05
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 44 2e-04
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 43 3e-04
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 42 5e-04
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079... 40 0.001
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 40 0.001
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 39 0.005
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 33 0.30
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 29 2.8
01_05_0091 + 18048595-18050559 29 3.7
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 29 4.9
03_01_0324 - 2525712-2525897,2526181-2526288,2526330-2526421,252... 28 8.5
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 60.5 bits (140), Expect = 1e-09
Identities = 44/109 (40%), Positives = 52/109 (47%)
Frame = +1
Query: 376 RFDFLLKQTEIFSHFMTNTPKSGGSPPKAKAGRPRKIKIDTEPEGPGDHRHRKTXXXXXX 555
R +LL+QTEIF+HF K S K GR R TE E D + K
Sbjct: 214 RLKYLLQQTEIFAHFA----KGNQSTEKKSRGRGRHASKMTEEEE--DEEYLKEEEDALD 267
Query: 556 XXXXXTNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGING 702
R + P IK G+MRDYQ+ GLNW+I LYENGING
Sbjct: 268 GAGGT---------RLVSQPSCIK-GKMRDYQLAGLNWLIRLYENGING 306
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 59.7 bits (138), Expect = 2e-09
Identities = 44/109 (40%), Positives = 52/109 (47%)
Frame = +1
Query: 376 RFDFLLKQTEIFSHFMTNTPKSGGSPPKAKAGRPRKIKIDTEPEGPGDHRHRKTXXXXXX 555
R +LL+QTEIF+HF K S K GR R TE E D + K
Sbjct: 160 RLKYLLQQTEIFAHFA----KGNQSKEKKPRGRGRHASKMTEEEE--DEEYLKEEEDALA 213
Query: 556 XXXXXTNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGING 702
R + P IK G+MRDYQ+ GLNW+I LYENGING
Sbjct: 214 GSGGT---------RLLSQPSCIK-GKMRDYQLAGLNWLIRLYENGING 252
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 46.8 bits (106), Expect = 2e-05
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = +1
Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
P Y++ G++R+YQ+ GL W++SLY N +NG
Sbjct: 1020 PSYLQGGKLREYQMNGLRWLVSLYNNNLNG 1049
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 598 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGING 702
R P ++ G +RDYQ+ GL WM+SLY N +NG
Sbjct: 949 RVTRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNG 983
>05_01_0318 -
2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
P ++ GE+R YQ+ GL WM+SL+ N +NG
Sbjct: 457 PSALEGGELRPYQLEGLQWMLSLFNNNLNG 486
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Frame = +1
Query: 367 RSKRFDFLLKQTEIFSHFM------------TNTPKSGGSPPKAKAGRPRKIKIDTEPEG 510
R + D LL QT+++S F+ +TP + K GR RK K + P+
Sbjct: 174 RFNKLDELLTQTQLYSEFLLEKMETIADVEGVDTPDEEEPVEEKKKGRGRKRKATSAPKY 233
Query: 511 PGDHRHRKTXXXXXXXXXXXTNSKQKTIF---RFEASPHYI----KNGEMRDYQVRGLNW 669
+ + +K + + T+ R+E + G+++ YQ++G+ W
Sbjct: 234 -NNKKAKKAVAAMLTRSREDCSPEDCTLTEEERWEKEQARLVPLMTGGKLKSYQIKGVKW 292
Query: 670 MISLYENGING 702
+ISL++NG+NG
Sbjct: 293 LISLWQNGLNG 303
>09_04_0287 -
16407324-16407551,16407647-16407748,16407824-16407922,
16408213-16408332,16408513-16408632,16408740-16408834,
16409109-16409365,16410134-16410309,16410401-16410587,
16410656-16411002,16411722-16411823,16411917-16412414,
16412520-16412624
Length = 811
Score = 40.3 bits (90), Expect = 0.001
Identities = 12/24 (50%), Positives = 22/24 (91%)
Frame = +1
Query: 631 GEMRDYQVRGLNWMISLYENGING 702
G+++ YQ++G+ W+ISL++NG+NG
Sbjct: 280 GKLKSYQIKGVKWLISLWQNGLNG 303
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 367 RSKRFDFLLKQTEIFSHFMTNTPKSGGSPPKAKAGRPRKIKIDTE 501
+ +R +FLL QTE++SHFM N K+G S P +A P + + D E
Sbjct: 449 QQQRLNFLLSQTELYSHFMQN--KAGESAPSDEASVPEEDEEDPE 491
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +1
Query: 610 SPHYIKNGEMRDYQVRGLNWMISLYENGING 702
+P K G +++YQ++GL W+++ YE G+NG
Sbjct: 561 TPELFK-GALKEYQLKGLQWLVNCYEQGLNG 590
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 454 PKAKAGRPRKIKIDTEPEGPGDHRHRKTXXXXXXXXXXXTNSKQK-TIFRFEASPHYIKN 630
P A++ + I+ + +++ R+ K K ++ R + P ++K
Sbjct: 535 PYAESTWEKDTDIEFAQDAIDEYKAREAATSILGKTVDFQRKKSKASLRRLDDQPEWLKG 594
Query: 631 GEMRDYQVRGLNWMISLYENGIN 699
G++RDYQ+ GLN++++ + N N
Sbjct: 595 GKLRDYQLEGLNFLVNGWRNDTN 617
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
P +K+ +R+YQ GL+W++++YE +NG
Sbjct: 661 PFLLKHS-LREYQHIGLDWLVAMYEKRLNG 689
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 577 SKQKTIFRFEASPHYIKNGEMRDYQVRGLNWM-ISLYEN 690
S + I +++ SP ++ G + YQ+ GLN++ S Y N
Sbjct: 215 SVTREIRQYKESPKFLSGGTLHPYQLEGLNFLRYSWYHN 253
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 424 TNTPKSGGSPPKAKAGRPRKIKIDTE 501
T P +GG PKA RP+ +K+D E
Sbjct: 492 TIQPVTGGKKPKAVKSRPKVVKLDGE 517
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +1
Query: 421 MTNTPKSGGSPPKAKAGRPR-KIKIDTEPEGPGDHRHRKTXXXXXXXXXXXTNSKQKTIF 597
+T TP +G +P K GRPR K T P TN KT+
Sbjct: 260 ITTTPVAGSNPSHGKRGRPRLDAKSHTRAPAP-----EPKQLPCRTSCRRATNCSSKTVA 314
Query: 598 RFEASPHYIKNGEMRDYQVRGLNWMIS 678
+AS ++N ++ G + +IS
Sbjct: 315 GLDASGSVVRNQLAQNIVQEGSSSVIS 341
>03_01_0324 -
2525712-2525897,2526181-2526288,2526330-2526421,
2527861-2528038
Length = 187
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 200 NLGHLVQYCFNCK*KWPSRM 259
N G+L+ YC+N K W ++M
Sbjct: 94 NCGYLISYCWNVKLAWNAKM 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,621
Number of Sequences: 37544
Number of extensions: 358762
Number of successful extensions: 1010
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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