Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l12
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      40   0.002
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 40   0.003
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.019
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      35   0.076
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.53 
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.71 
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                28   8.7  

>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/61 (62%), Positives = 42/61 (68%)
 Frame = +1

Query: 520 HRHRKTXXXXXXXXXXXTNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGIN 699
           HRHR+T           T   Q +I  FE SP+YIK GEMRDYQVRGLNW+ISLYENGIN
Sbjct: 14  HRHRRTEQEEDEELLNQTKGAQTSILHFEESPNYIKGGEMRDYQVRGLNWLISLYENGIN 73

Query: 700 G 702
           G
Sbjct: 74  G 74


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
           P  +  G +R YQ+ G+ W+  LYENG+NG
Sbjct: 805 PVLLTGGALRSYQLEGVEWLKGLYENGVNG 834


>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
           P  +  G +++YQ+ GL WM+SL+ N +NG
Sbjct: 267 PSMLVGGRLKEYQLAGLEWMVSLHNNNLNG 296


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 613 PHYIKNGEMRDYQVRGLNWMISLYENGING 702
           P  +  G +++YQ+ GL WM+SL+ N +NG
Sbjct: 698 PSMLVGGRLKEYQLAGLEWMVSLHNNNLNG 727


>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 574 NSKQKTIFRFEASPHYIK-NGEMRDYQVRGLNWMISLYENGING 702
           N    TI      P  +  + +++ YQ+ GLNW+I ++E G+NG
Sbjct: 469 NDSHATISGLVTQPDILNPSRQLKPYQLTGLNWLILMHEQGVNG 512


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +1

Query: 619 YIKNGEMRDYQVRGLNWMISLYENGING 702
           ++  G +R+YQ+ GL+W+++++E  +NG
Sbjct: 778 FLLRGTLREYQLIGLDWLVTMHEKRLNG 805


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +1

Query: 457 KAKAGRPRKIKIDTEPEGPGDHRHRKTXXXXXXXXXXX-TNSKQKTIFRFEASPHYIKN- 630
           KAK G+ +K K  T P G       K              N K+    R+E  P Y+   
Sbjct: 580 KAKKGKNKKSK-KTLPTGDTPEEESKPDIEPAQPIPTPQVNCKE----RYEKQPAYLDET 634

Query: 631 -GEMRDYQVRGLNWMISLYENGIN 699
            G++ +YQ  GLNW+   +  G N
Sbjct: 635 GGKLHEYQREGLNWLRFSWAQGTN 658


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 598 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGIN 699
           + E SP Y     +R+YQ+ G+NW++  + N  N
Sbjct: 565 KLETSPVYKDENTLREYQLEGVNWLMFCWCNRQN 598


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 403  EIFSHFMTNTPKSGGSPPKAKAGRPRKIKIDTEPEGP 513
            +I SH  ++TP    +P  AK  R R +K+  EPE P
Sbjct: 1226 KITSHGTSSTPAPNSTP--AKRTRGRGVKVKDEPETP 1260


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +2

Query: 275 PILATIPMALQVTRHLQEGKKVISRVRLKLIV 370
           PILAT+P+A Q   HL E  K  S V L  IV
Sbjct: 233 PILATVPIARQKPIHLVEQLKQRSDVTLLEIV 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,506,197
Number of Sequences: 59808
Number of extensions: 426212
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)