Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8l12
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 88 7e-18
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 40 0.001
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 40 0.001
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 38 0.007
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 38 0.007
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 37 0.017
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 35 0.067
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 33 0.27
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 33 0.27
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 31 1.1
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 3.3
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 29 4.4
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 5.8
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 5.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC006744-2|AAF60505.2| 503|Caenorhabditis elegans Cytochrome p4... 28 7.7
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 87.8 bits (208), Expect = 7e-18
Identities = 56/123 (45%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +1
Query: 346 ESKIETDRSKRFDFLLKQTEIFSHFMTN--TPKSGGSPPKAKA-GRP-RKIKIDTEPEGP 513
ES D KRF+ LL++TE FSH +++ + G+P K GRP +K ID
Sbjct: 38 ESSDAADSFKRFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGID------ 91
Query: 514 GDHRHRKTXXXXXXXXXXXTNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENG 693
GDHRHRKT K + F+ SP YI+NGEMRDYQVRGLNW+ SL N
Sbjct: 92 GDHRHRKTEQEEDEEMVADA-IKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNK 150
Query: 694 ING 702
ING
Sbjct: 151 ING 153
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 40.3 bits (90), Expect = 0.001
Identities = 13/28 (46%), Positives = 23/28 (82%)
Frame = +1
Query: 619 YIKNGEMRDYQVRGLNWMISLYENGING 702
++ G++R+YQ+ GL+WM++LYE +NG
Sbjct: 552 FLIRGQLREYQMVGLDWMVTLYEKNLNG 579
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 40.3 bits (90), Expect = 0.001
Identities = 13/28 (46%), Positives = 23/28 (82%)
Frame = +1
Query: 619 YIKNGEMRDYQVRGLNWMISLYENGING 702
++ G++R+YQ+ GL+WM++LYE +NG
Sbjct: 552 FLIRGQLREYQMVGLDWMVTLYEKNLNG 579
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 37.9 bits (84), Expect = 0.007
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 637 MRDYQVRGLNWMISLYENGING 702
++ YQ++GL WM+SLY N +NG
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNG 554
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 37.9 bits (84), Expect = 0.007
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 637 MRDYQVRGLNWMISLYENGING 702
++ YQ++GL WM+SLY N +NG
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNG 554
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 37.9 bits (84), Expect = 0.007
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 637 MRDYQVRGLNWMISLYENGING 702
++ YQ++GL WM+SLY N +NG
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNG 554
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 36.7 bits (81), Expect = 0.017
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 634 EMRDYQVRGLNWMISLYENGING 702
+++ YQ++GL WM+SL+ N +NG
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNG 387
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = +1
Query: 580 KQKTIFRFEASPHYIK-NGE----MRDYQVRGLNWMISLYENG 693
K+ +FE+ P ++K +GE +RDYQ+ GLNWM+ + G
Sbjct: 381 KRPKFEKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKG 423
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 598 RFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 693
++E P Y+ G++ YQ+ GLNW+ + NG
Sbjct: 587 KYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNG 620
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 598 RFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 693
++E P Y+ G++ YQ+ GLNW+ + NG
Sbjct: 587 KYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNG 620
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 598 RFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 693
++E P +I G + YQ+ G+NW+ + NG
Sbjct: 601 KYEVQPDFISETGGNLHPYQLEGINWLRHCWSNG 634
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 598 RFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 693
++E P +I G + YQ+ G+NW+ + NG
Sbjct: 601 KYEVQPDFISETGGNLHPYQLEGINWLRHCWSNG 634
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 598 RFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 693
++E P +I G + YQ+ G+NW+ + NG
Sbjct: 601 KYEVQPDFISETGGNLHPYQLEGINWLRHCWSNG 634
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 472 CQPLLLEDSHQILECWS*NEKISPFALVENRISWNDQFQSYSRN 341
C ++D H +LE + N+ S L WND+ QSY N
Sbjct: 319 CPVRPIQDKHTLLERYRLNDLDSLKILSNKSPQWNDETQSYVLN 362
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 472 CQPLLLEDSHQILECWS*NEKISPFALVENRISWNDQFQSYSRN 341
C ++D H +LE + N+ S L WND+ QSY N
Sbjct: 319 CPVRPIQDKHTLLERYRLNDLDSLKILSNKSPQWNDETQSYVLN 362
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 173 NQKPAIVHWLNNLKL 129
NQKP VHWLNN +L
Sbjct: 418 NQKPFSVHWLNNKEL 432
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 622 IKNG-EMRDYQVRGLNWMISLYENGINGNFG 711
+K G + DYQ+ G+ W+I +Y +N G
Sbjct: 388 LKEGCTLHDYQLIGVKWLIMMYNKDLNAILG 418
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 622 IKNG-EMRDYQVRGLNWMISLYENGINGNFG 711
+K G + DYQ+ G+ W+I +Y +N G
Sbjct: 388 LKEGCTLHDYQLIGVKWLIMMYNKDLNAILG 418
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 430 TPKSGGSPPKAKAGRPRKIKIDTEPEGP 513
TP++GG KA G PRK + T+ P
Sbjct: 483 TPEAGGGEFKAPVGIPRKFSVKTDDVKP 510
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 625 KNGE-MRDYQVRGLNWMISLYENGIN 699
KNG +R+YQ G++W++ Y N N
Sbjct: 1182 KNGNSLREYQFEGVDWLLYCYYNAQN 1207
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 433 PKSGGSPPKAKAGRPRKIKIDTEPEGP 513
P++GGSP +AG P + P GP
Sbjct: 178 PQAGGSPSSFQAGAPTSQNVQGYPGGP 204
>AC006744-2|AAF60505.2| 503|Caenorhabditis elegans Cytochrome p450
family protein 29A3 protein.
Length = 503
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 206 QDCEVRKYIQINQKPAIVHWLNNLKL 129
++C +K+ Q+N+K ++H L N K+
Sbjct: 447 RNCIGQKFAQLNEKVMVIHLLKNFKI 472
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,317
Number of Sequences: 27780
Number of extensions: 352548
Number of successful extensions: 1012
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -