Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l11
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   1.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.5  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    26   5.9  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   5.9  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   7.9  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 237 DFMDGVPVKISEKYKKPPSIELPYTLIECPIRAQNVVDNVKYCSSFESNVLIK 395
           D+M G+P+    K+K  P  +L        +    +VDN  +      NVL+K
Sbjct: 394 DYMPGIPLSAFLKHKSGPFNKLLANTGNNALFQMLIVDNFTHADLHPGNVLVK 446


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
 Frame = +3

Query: 339 NVVDNVKYCSSFESNVLIKVKELRRIKETKKNERKHRXXXXXXXXXXXXDAIALAEEKER 518
           + ++N    +  ++  L ++ ++ R K     +R HR              I    +KER
Sbjct: 183 SALNNYNKTTDIKARSLDRLSDMTRPKLLLNTKRSHRSSEEPGASSPVTSPILKDSQKER 242

Query: 519 L-----KQLNVSEVSYPSTDEINPLTSDEKNEMNCDSNIGN---TKETAEVSITDINIIP 674
           +     K +    VS  S + I+ + SD  + ++ +++      TK T   S ++I+I P
Sbjct: 243 IQALRNKAIKTYSVSTESAERIDSIRSDNLSPLSLNTSSFRRPITKPTPFNSDSNISIDP 302


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 510 KERLKQLNVSEVSYPSTDEINPLTSDEKNEMNCDSNIGNTKETAE 644
           +++L +L   ++ YP T  +N  T+   N     S+ GN  +  E
Sbjct: 118 RQQLSELKELDLPYPITTCLNDDTTTRSNNQVIQSSCGNNLQRIE 162


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 495  ALAEEKERLKQLNVSEVSYPSTDEINPLTSDEKNEMNCDSNIGNTKETAEVSITDINI 668
            A+ +E +    +   EV     D+I     ++  E+  D N+   +ET E+   DI +
Sbjct: 900  AVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTTLEETIEIPANDIEV 957


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 516 FPFPLPKLWHPTSSVLLLPTAVIDV 442
           +P  L K W   S VL +PTA++ +
Sbjct: 87  YPGTLSKTWKNPSEVLFMPTALLAI 111


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 KKQTLHYHCLIIALTYSFDMSHFG-DFMDGVPVKISEKYKKPPSIELPYTL 314
           +K  L    L + L  SF   +   DF +G PV +S K    PS+    TL
Sbjct: 176 RKDLLGCSQLFLLLKGSFTHEYLTIDFYNGTPVSVSSKLHVSPSLYHSSTL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,960
Number of Sequences: 5004
Number of extensions: 48455
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)