Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l11
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907...    30   2.0  
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    29   3.5  
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165...    29   4.6  
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513...    28   8.1  

>02_05_1241 -
           35189111-35189389,35189604-35189711,35189982-35190713,
           35190811-35191230,35191484-35191565,35191719-35192002,
           35193104-35193256
          Length = 685

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 486 DAIALAEEKERLKQLNVSEVSYPSTDEINPLTSDEK 593
           D +A+A+ K + K   +  VS+P+T+E    TSD+K
Sbjct: 216 DPVAVAQAKAKRKAQKLDIVSHPNTNEGRDDTSDDK 251


>11_01_0574 +
           4582098-4582331,4582450-4582492,4582683-4582757,
           4584344-4584465,4584547-4584654,4585975-4586119,
           4586786-4586869,4586997-4587345,4587527-4587666,
           4587784-4588037,4588409-4588576,4588686-4588976,
           4589329-4589538,4589778-4589860,4590288-4590414,
           4593624-4595516,4596274-4596395,4596487-4596628,
           4596719-4596940,4597489-4597563,4598351-4598452,
           4598616-4598819
          Length = 1730

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 133 WLLNLKSDSFERNKHCTIIV*LSL*HTALICHILAISWTECPLKYRKNTKNLQVL 297
           W+  +  D  E   +C I       HTA++  +      ECP++Y   T++L VL
Sbjct: 823 WVGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDVQTEDLPVL 877


>08_02_0498 -
           17815189-17815249,17815852-17815938,17816532-17816587,
           17816625-17816721,17817085-17817152
          Length = 122

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 632 FCITYVTITVHFIFLIRSQWIYLVCTRVRHFRHIKLFQPFLFLCQSYGI 486
           +C+  V    +  F + S WIY VCT V H + +++ Q   +L    G+
Sbjct: 59  YCVLSVDTLENDAFSLSSVWIYSVCT-VSHPQDLEISQQQQYLQPRIGV 106


>08_01_0577 +
           5132876-5132894,5134352-5134845,5134937-5135162,
           5135695-5135917,5136315-5136528,5136769-5136806,
           5136977-5137142
          Length = 459

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 537 SEVSYPSTDEINPLTSDEKNEMNCDSNIGNTKETAEVSITDINIIPATTAM 689
           ++VSY S DEI+PLT    N M   S I ++       +  +N + A  A+
Sbjct: 334 NQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVRPVNALGAAIAI 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,766
Number of Sequences: 37544
Number of extensions: 265098
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)