Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l11
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        28   6.2  
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)                     28   6.2  
SB_284| Best HMM Match : rve (HMM E-Value=0.001)                       28   6.2  

>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 570  NPLTSDEKNEMNCDSNIGNTKETAEVS 650
            +P  S EKN   CDS+  N  +T++V+
Sbjct: 1768 HPSNSLEKNSRTCDSHTNNVNQTSDVT 1794


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 133  WLLNLKSDSFERNKHCTII-V*LSL*HTALICHILAISWT 249
            +L +L    F    HC ++ +  S+ H + IC +LAIS+T
Sbjct: 1059 FLFSLNIALFSNGIHCAVLSIEKSMKHKSQICQLLAISYT 1098


>SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +3

Query: 243 MDGVPVKISEKYKKPPSIELPYTLIECPIRAQNVVDNVKYCSSFESNVLIKVKEL--RRI 416
           +DG+ VK+   ++ P  + LP   +   ++  + + ++ Y    E  V+ K +++  ++ 
Sbjct: 27  LDGIEVKVGPSFQPPAKVALP---VGFHLKDPSEILSLTYDFGLEHEVIAKAEKIKAKKF 83

Query: 417 KETKKNER 440
           +E ++NE+
Sbjct: 84  QEEEENEQ 91


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +3

Query: 243  MDGVPVKISEKYKKPPSIELPYTLIECPIRAQNVVDNVKYCSSFESNVLIKVKELRRIKE 422
            ++GV  K  +  ++   +E     +E   +     DN K   S+E  +    KE+  +K+
Sbjct: 1274 LEGVTTKQKKDIERVKQMEEKLKELERQSKQSEETDNPKVIESYEDKIKALEKEISNLKD 1333

Query: 423  TKKNERK 443
               N  K
Sbjct: 1334 RNNNGEK 1340


>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
          Length = 523

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 204 LTYSFDMSHFGDFMDGVPVKISEKYKKPPSIELPYTLIECPIRAQNVV 347
           L+  F + HF  ++ G P+K+   +K   SI    +LI  P R Q ++
Sbjct: 468 LSIVFGVEHFEHYLYGRPIKVETDHKPLESI-FKKSLISAPKRLQRMM 514


>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 1201

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 204 LTYSFDMSHFGDFMDGVPVKISEKYKKPPSIELPYTLIECPIRAQNVV 347
           L+  F + HF  ++ G P+K+   +K   SI    +LI  P R Q ++
Sbjct: 714 LSIVFGVEHFEHYLYGRPIKVETDHKPLESI-FKKSLISAPKRLQRMM 760


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,139
Number of Sequences: 59808
Number of extensions: 328660
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)