Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l09
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.83 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 274 IALYCLEIILTSFLIYGAHKRIISYMKWFYYFTVTTTVAAIL----IQILEFTSYRSFGF 441
           I L C+     +F+++  H  ++  + +FYY  +    A I+    +  L    Y     
Sbjct: 233 IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCAL 292

Query: 442 IIEVCLFSASGLFI 483
           II +C++     FI
Sbjct: 293 IILLCIYYFCRAFI 306


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 127 LRKGVLVFGYINLFFSAFLVGLHSYGVHYQKNVFSVYHGITTG 255
           L K  +VF +   FFSA++  L +Y V      F     ++TG
Sbjct: 32  LYKIFVVFSFAVTFFSAWICALVNYNVSEISENFYYLPAMSTG 74


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 182 RKALKNRLIYPNTNTPFLRGMQKQHL 105
           +K  K R I+P   T  LR    QHL
Sbjct: 176 KKNQKKRGIFPKVATNILRAWLFQHL 201


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 182 RKALKNRLIYPNTNTPFLRGMQKQHL 105
           +K  K R I+P   T  LR    QHL
Sbjct: 332 KKNQKKRGIFPKVATNILRAWLFQHL 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,316
Number of Sequences: 336
Number of extensions: 3442
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)