Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l09
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    32   0.097
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    28   1.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   3.6  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.4  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.4  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   8.4  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   8.4  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 31.9 bits (69), Expect = 0.097
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 283 YCLEIILTS-FLIYGAHKRIISYMKWFYYFTVTTTVAAILIQILEFTSYRSFGFIIEVCL 459
           Y L+I+ T+ F I   H+R+   MKWF  F +T  +A + +Q L      S G +  V  
Sbjct: 128 YQLKILTTAIFSILLLHRRL-GPMKWFSLFLLTGGIAIVQLQNLNSDDQMSAGPMNPVTG 186

Query: 460 FSA 468
           FSA
Sbjct: 187 FSA 189


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 142 LVFGYINLFFSAFLVGLHSYGVHYQKNVFSVYHGITTGVPTELSIALYCLEIILTSF 312
           L +  I LFF+ +L  +  +   +QK  F++   + TG    + I  +CL++ + +F
Sbjct: 694 LAWSGIGLFFNYYLKKI--FADWWQKYNFTLSAALDTGTQLSVIILFFCLQLPMVNF 748


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 197 LCKPTRKALKNRLIYPNTNTPFLRGMQKQHLPNSGRSQYIVTVFSI 60
           L KP     KN  +  N  TP  +GM  +   N+G   +  TVF I
Sbjct: 789 LLKPNEVQSKNNFL--NKCTPLQKGMLYESFSNNGNLYFNHTVFKI 832


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 429 FVWIYHRSVPFQRQRTVHTNILDPSCEESHQ 521
           +VW +H S  F R  T  TN+    C  SH+
Sbjct: 579 WVWGFHASNFFLRDETNETNVFFIDCGGSHR 609


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 480 HTNILDPSCEESHQEARNGWP 542
           H  +L P+CEE+ + A + WP
Sbjct: 60  HVIMLGPNCEEAAKTALHTWP 80


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 497 IKYICMNSPLALKRHTSMINPNERYDVNSSICMSI 393
           IKY+ ++SP+  KR +    P    D++S+I  S+
Sbjct: 336 IKYVLLDSPIFRKRTSHDPYPPRMDDISSAIFYSV 370


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 148 FGYINLFFSAFLVGLHSYGVHYQKNVFS---VYHGITTGVPTELSIALY 285
           F YI+ +      G  +YGV Y KN  S   ++  I  G+   L+I L+
Sbjct: 217 FFYISCYGCNIPAGFIAYGVQYAKNTISPWKLFMIIVGGITFFLTIGLF 265


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 573 DLMKRIVVEMGAIHF*LLDETPHMKDQVYLYEQS 472
           DLMKR  ++   I   +LDE  +M DQ  L +QS
Sbjct: 243 DLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 276


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 427 RSFGFIIEVCLFSASGLFI-QIYLILHVR 510
           + F F  E+ LFS   LFI   + +LHVR
Sbjct: 24  KCFSFFFELRLFSPQCLFIVYFFYLLHVR 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,696
Number of Sequences: 5004
Number of extensions: 57507
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)