Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l09
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.73 
SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                29   2.9  
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_45553| Best HMM Match : CXC (HMM E-Value=3.9)                       28   6.8  
SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)                28   6.8  
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)            28   9.0  
SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                  28   9.0  
SB_7040| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
 Frame = +1

Query: 121 MPLRKGVLVFGYI---NLFFSAFLVGLHSYGVHYQKNVFSVYHGITTGVPTELSIALYCL 291
           + L K  L+ G+I    ++F  F+  L    V+ Q +    Y  +       L   L+CL
Sbjct: 56  LSLEKCDLLVGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNLFCL 115

Query: 292 EIILTSFLIYGAHKRIISYMKWFYYFTVTTTVAAILIQILEFTSYRSFGFIIEV 453
            ++L+  L  G    I+ +  WF   T+      +L+ I++F    +F ++ ++
Sbjct: 116 SVLLSLLLPEGEIGNILMHTGWF--STIIVMFMEVLL-IIDFAKNSNFAWVFKM 166


>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 109 CCFCMPLRKGVLVFGYINLFFS-AFLVGLHSYGVH---YQKNVFSVY 237
           CC CM +R G +V G+ +LF   A +V L    +H   Y++  +  Y
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEEKYYQTY 66


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 429 FVWIYHRSVPFQRQR-TVHTNILDPSCEESHQEARNGWP 542
           F++ Y +  PF +Q  TV T I  PS   +   +RN WP
Sbjct: 230 FIYSYCQEFPFPKQYFTVPTMIASPSHRNNIYSSRNVWP 268


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 52  LSIIENTVTMYCDLPEFGRCCFCMPLRKGVLVFGYINLFFSAFLVGLHSYGVHYQKNVFS 231
           L  I + +T+Y  LP+FG   F           GY++  F+ FL  +   G H  K V +
Sbjct: 468 LGYIRDFMTVYKVLPKFGMVLFSELSSWNANGLGYLDEDFARFLAWMKLEG-HLDKTVLT 526

Query: 232 VY--HG 243
           ++  HG
Sbjct: 527 IFSDHG 532


>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 155 ISICFSAPSWLACTATVFIIKKTSSPCITASRPA 256
           +S C   P WL  TA + I++KTS P   ASRP+
Sbjct: 857 LSKCLLTP-WL--TAEICIVRKTSDPDNRASRPS 887


>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 112 STFRILVDRNTLSLCFLLYLKKFRAHYAYRPASG 11
           +T R+L  R+   L  +LYLK +R H    PA G
Sbjct: 260 ATCRVLNYRHVTMLSNVLYLKYYRCHRRANPAMG 293


>SB_45553| Best HMM Match : CXC (HMM E-Value=3.9)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 255 RTHGAEHRTLLPRNYTNIFSDLWCP*ENNLVH 350
           R H A  R    RN T +   +W P +NN+ H
Sbjct: 86  RNHTASFRHAKHRNSTELSKYIWSPKDNNIEH 117


>SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 370 TVTTTVAAILIQILEF-TSYRSFGFIIEVCLFSASGLFIQIYLILH 504
           T+T T+  I+I I+   T      FII V LFS+   FI I+ I++
Sbjct: 156 TITITIIIIIILIIVVVTIVNIIIFIIIVVLFSSLPAFITIFTIIN 201


>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
          Length = 582

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
 Frame = +1

Query: 145 VFGYINLFFSAFLVGLHSYGVHYQKNVFSVYHGITTGVPTELSIALYCLEIILTSFLIYG 324
           VF +++ ++  F+ G     V++ + V       T+ V + L++AL  ++ +L     +G
Sbjct: 253 VFHFLSGYYCLFINGKPDNSVNFNQGV------ATSPVISNLAMALV-VDQVLERIGQFG 305

Query: 325 AHKRIISYMKWFYYFTVTTTVAAILIQILE---FTSYRSFGFIIEVC----LFSASGLFI 483
             ++ I  M  F +F +T     ++    E     S  S   ++       ++S S   I
Sbjct: 306 PFQKRILAMFMFIFFPLTYQTLIMVFVAYEPPWMCSTNSSACLLSNSTGREIYSTSTQPI 365

Query: 484 QIYLILHVRSLIKKLEMD--GPHLYDNPLHQIVT 579
           ++Y   H R  + + +     P LY+ P+H IVT
Sbjct: 366 ELY---HRRCKLNRTDWKFADPELYEGPVHTIVT 396


>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 688

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 164 CFSAPSWLACTATVFIIKKTSSPCITASR 250
           C  AP    C   V +   TS PCI ASR
Sbjct: 435 CIQAPRSFVCKHLVPMYTSTSFPCIQASR 463


>SB_7040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 410 WNSHRIVRLDLSSKCAFSAPADCSYK 487
           W S R++ LD+ SK  FS  A+ +YK
Sbjct: 112 WESVRLLGLDVDSKLTFSDHAERTYK 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,057
Number of Sequences: 59808
Number of extensions: 421502
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)