Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l08
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   0.70 
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   1.2  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    25   2.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   5.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    24   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   8.7  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 131 ITQLDCMYGGWR*GEPSLIN 72
           IT  DC+YG WR  E S++N
Sbjct: 144 ITIQDCVYGLWRARESSILN 163


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 91  PYLHPPYIQSSCVIGAKDYKGGNIKIIY 174
           PY H PY   +    A  YKG +++++Y
Sbjct: 146 PYNHLPYYHPAVAGIAFHYKGSSVEVLY 173


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 6   LRISELLFSVEKGALFQASLIRVDKRRFSLSPPSIHTI 119
           LR + L  S +  ++FQAS +     R  +SPPSI  I
Sbjct: 4   LRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 284 EVHFIV*IKQKKKNESIFRYINIYLSSTVPTYHSYNVYIIFI 159
           EV  +      KKN  +FR  +   SST   ++S   Y I +
Sbjct: 204 EVRMLTHENNNKKNSYVFRLFDRVSSSTFYFFNSLFAYFIIL 245


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 191 YHSYNVYIIFIFPPL*SLAPIT 126
           YH YN Y+ F FP    LAP++
Sbjct: 44  YHGYNNYMQFAFPN-DELAPLS 64


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 91   PYLHPPYIQSSCVIGAKDY 147
            P+ +PPY      IGAK+Y
Sbjct: 3980 PFKNPPYYVQFFEIGAKNY 3998


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,430
Number of Sequences: 5004
Number of extensions: 25130
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)