Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l08
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516     28   1.9  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    26   5.7  
10_08_0922 - 21593030-21593225,21593319-21594142                       26   7.6  
03_02_0187 - 6248226-6249226,6249296-6250148                           26   7.6  

>01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516
          Length = 522

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 79  RDGSPYLHPPYIQSSC-VIGAK 141
           RDG   +HPP I SSC +IG +
Sbjct: 327 RDGPSRVHPPVISSSCPIIGLR 348


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 109 YIQSSCVIGAKDYKGG 156
           Y+++ C I + DYKGG
Sbjct: 654 YVEAQCCIASHDYKGG 669


>10_08_0922 - 21593030-21593225,21593319-21594142
          Length = 339

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 197 PTYHSYNVYIIFIFPPL*SLAPITQLDCMYGGW 99
           P YH Y+ + + + P L    P+ +L+ M   W
Sbjct: 190 PMYHQYHHHAVHMAPMLPPPPPVAELNPMASPW 222


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 143 SLAPITQLDCMYGGWR*GEPSLINSYERSLKKCPLF 36
           S A    LDC +GGW  G  S  +  E+  +  PLF
Sbjct: 461 SSASYYYLDCGHGGWV-GNDSRYDKQEKEREGTPLF 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,450,369
Number of Sequences: 37544
Number of extensions: 133738
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)