Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l08
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   0.84 
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)                     29   1.1  
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  
SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)                    26   7.9  

>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 271  LSKLNKRKKMNRFFDTSTFTYRVRYL 194
            LS LN+R+ +N    TS F YR+R+L
Sbjct: 1120 LSSLNQRRSLNSGGRTSMFLYRLRHL 1145


>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
          Length = 275

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  LIRDGSPYLHPPYIQSSCVIGAKDYKGGNIK 165
           ++++  P +HPPY+   C++    +K   IK
Sbjct: 96  VVQEDLPTIHPPYLCYKCILSLGRFKKAKIK 126


>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 236 IFRYINIYLSSTVPTYHSYNVYIIFIFPPL*SLAPITQLD 117
           I +++NI  +STVP+    N Y I+I     ++ P T+ D
Sbjct: 78  ILKHVNIRKTSTVPSSTKANKYRIWINGVKTTVEPDTEAD 117


>SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)
          Length = 785

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 236 IFRYINIYLSSTVPTYHSYNVYIIFIFPPL*SLAPITQLD 117
           I +++NI  +STVP+    N Y I+I     ++ P T+ D
Sbjct: 78  ILKHVNIRKTSTVPSSTKANKYRIWINGVKTTVEPDTEAD 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,816,278
Number of Sequences: 59808
Number of extensions: 161962
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)