Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l08
         (321 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032112-1|AAH32112.1|  552|Homo sapiens integrin alpha FG-GAP r...    27   9.5  
BC013047-1|AAH13047.1|  552|Homo sapiens integrin alpha FG-GAP r...    27   9.5  
BC010521-1|AAH10521.1|  526|Homo sapiens ITFG3 protein protein.        27   9.5  
AK057165-1|BAB71374.1|  540|Homo sapiens protein ( Homo sapiens ...    27   9.5  
AE006462-12|AAK61220.1|  636|Homo sapiens unknown function protein.    27   9.5  

>BC032112-1|AAH32112.1|  552|Homo sapiens integrin alpha FG-GAP
           repeat containing 3 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 195 YLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRRTVSYQLL 67
           +LSL  C++ +++ S +I      A   +WR++    V Y  L
Sbjct: 53  FLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFL 95


>BC013047-1|AAH13047.1|  552|Homo sapiens integrin alpha FG-GAP
           repeat containing 3 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 195 YLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRRTVSYQLL 67
           +LSL  C++ +++ S +I      A   +WR++    V Y  L
Sbjct: 53  FLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFL 95


>BC010521-1|AAH10521.1|  526|Homo sapiens ITFG3 protein protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 195 YLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRRTVSYQLL 67
           +LSL  C++ +++ S +I      A   +WR++    V Y  L
Sbjct: 27  FLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFL 69


>AK057165-1|BAB71374.1|  540|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32603 fis, clone STOMA1000117. ).
          Length = 540

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 195 YLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRRTVSYQLL 67
           +LSL  C++ +++ S +I      A   +WR++    V Y  L
Sbjct: 53  FLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFL 95


>AE006462-12|AAK61220.1|  636|Homo sapiens unknown function protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 195 YLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRRTVSYQLL 67
           +LSL  C++ +++ S +I      A   +WR++    V Y  L
Sbjct: 119 FLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFL 161


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,611,896
Number of Sequences: 237096
Number of extensions: 794305
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)