Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l08
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-8|CAA91152.1|  459|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    28   1.7  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    28   1.7  
Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    26   5.3  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    26   5.3  

>Z54342-8|CAA91152.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.13 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 277 ILLSKLNKRKKMNRFFDTSTFTYRVRYLPITLIMCI*SLYFL 152
           +LL   + R++      T T TY +  L + LIM I   Y L
Sbjct: 13  LLLENRDNRRRNGNALSTKTITYSISILVVILIMAIPIAYTL 54


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -3

Query: 319 FFLKYCVLFLF*KYILLSKLNK-RKKMNRFFDTSTFTYRV----RYLPITLIMCI 170
           FFL  C++FLF  Y+ ++K+N+ R ++   F  +   Y++      L   +I+CI
Sbjct: 41  FFL-ICLMFLFPCYVYVNKINRQRDELTSLFPVTDHFYKMIKATNLLIAVVIICI 94


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -3

Query: 319 FFLKYCVLFLF*KYILLSKLNK-RKKMNRFFDTSTFTYRV----RYLPITLIMCI 170
           FFL  C++FLF  Y+ ++K+N+ R ++   F  +   Y++      L   +I+CI
Sbjct: 41  FFL-ICLMFLFPCYVYVNKINRQRDELTSLFPVTDHFYKMIKATNLLIAVVIICI 94


>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 210 IEYGTYLSLL*CVYNLYISSLIIFSTYHTARLYVWRVEIRR 88
           ++YG  L +  C+  L I S+ IF +  T  LY+   ++RR
Sbjct: 22  VDYGQTLFM--CILYLSIGSVSIFCSLTTITLYLTNRDLRR 60


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 244 MNRFFDTSTFTYRVRYLPITLIMCI*SL 161
           + R +DT  FTY ++++   + +C+ SL
Sbjct: 50  LGRRYDTGRFTYWLKFVADVIFLCVPSL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,943,721
Number of Sequences: 27780
Number of extensions: 134547
Number of successful extensions: 327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)