Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l02
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    29   0.64 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    29   0.64 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.5  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   2.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.6  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.5  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 228 GRREPRTPPAGFGPRRSISPAITQRERRS 142
           GR+ PRTP     P+ S SP  T++ R S
Sbjct: 143 GRQSPRTPIGSTTPKSSHSPPSTRKRRGS 171


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = -2

Query: 222 REPRTPPAGFGPRR----SISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPP 55
           R P TPP+   P      + SPA+ Q+ ++ D+  S  +P  P  +    A    S    
Sbjct: 60  RYPETPPSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQ-PAMLSPSTAAS 118

Query: 54  QTHPRHAECASGA 16
           Q H  H+  +S A
Sbjct: 119 QHHHHHSSSSSYA 131


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 216  PRTPPAG--FGPRRSISPAITQRERRSDT-PGSMTAPRGPLSATYGRARWKSSKTPPQTH 46
            P+ PP      P  +  P I Q    S   P S    R P++ + GR+   +S + P T+
Sbjct: 1052 PQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTY 1111

Query: 45   P 43
            P
Sbjct: 1112 P 1112


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 421 TVGYIFMLDFVIFSTSFFLYSH 486
           T+GYI ++  V  STSFF+Y+H
Sbjct: 299 TIGYIKVIPMV--STSFFVYNH 318


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 207 PPAG--FGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTHPRHA 34
           PP+   F P  S SP++     +S       +P    SA   ++   S+K PP +   HA
Sbjct: 374 PPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQSHVPSAKVPPTSKLNHA 433

Query: 33  ECA 25
           + A
Sbjct: 434 QLA 436


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 421 YKSEDSKQ--TKHKEQNNNEDKDRQTQHKLNQK 329
           YK++  KQ  + HK  ++ + K   ++HK N K
Sbjct: 543 YKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDK 575


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 181 LNLSRHNTTREKERYPWEYDCSQRPVIRHLRTRPVEVQQNSPT 53
           LN +     R ++  P   D    P+I+  R RP +++ +SP+
Sbjct: 96  LNEAPRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,284
Number of Sequences: 5004
Number of extensions: 50624
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)